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Showing 1-16 of 16
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| Post Date | Headline |
| Mar 11, 2019 |
ICA AROMA agg vs non-agg I just want to clarify something. If we’re using the aggressive denoising strategy on the _desc-preproc_bold.nii.gz data, do we also need to include the motion parameters (trans_x... |
| Mar 11, 2019 |
Dmriprep: an fmriprep for diffusion? I’m also working on a pipeline for diffusion image processing https://github.com/pennbbl/qsiprep and across-software reconstruction. The preprocessing part is mostly done and the... |
| Mar 11, 2019 |
BIDS - b0 correction for DWI Dear all,We acquired a b0 with a reverse phase encoding direction to be used to correct DWI (topup). I would like to know where to put such images in the BIDS format. Should it go... |
| Mar 11, 2019 |
GSoC Project Idea 7: Implementing automatic white matter parcellation in Nighres Hello @piloubazin. I’m interested in working on the topic ‘’ as a part of GSoC 2019. I’m currently pursuing a Master’s degree in Computer Science and have worked extensively... |
| Mar 11, 2019 |
GSoC Project Idea 14: Producing publication-ready brain network analysis results and visualisations from the command line Hi @KirstieJane . I’m interested to work on this topic as part of the GSoC 2019. I’ve worked on nilearn, matplotlib and networkx. Currently, I’m working on structural connectivity... |
| Mar 11, 2019 |
Video Data of Subjects in BIDS So, to be clear, we have video data of every run for each of our subjects. There is a part of the standard, at least as originally published in Nature, that seems to suggest that it... |
| Mar 11, 2019 |
Freesurfer error FOV > 256 Hi, Chris,I also encountered similar problem with my own data when using recon function (with --fs-no-reconall, I could finish the preprocessing)Here is the log from recon-all.log:Mon... |
| Mar 11, 2019 |
Siemens "Invert RO/PE polarity" detected by dcm2nii? Don’t know the details about how dcm2niix accesses the information, but we use the “Invert RO/PE Polarity”-option in the CMRR sequences for our spin echo fieldmaps (Siemens Prisma).... |
| Mar 11, 2019 |
Siemens "Invert RO/PE polarity" detected by dcm2nii? Many thanks for looking into the documentation and code base, @rwblair. I am reassured that this is not something so obvious that I should have known about it already, and I will keep... |
| Mar 11, 2019 |
GSoC Project Idea 6.2: Improve accessibility and interactivity for datasets in CATMAID I might be able to help…how can I begin? I’ve the skillset which is required for this project |
| Mar 11, 2019 |
How to interpret SpaceNet coefficients I ran a SpaceNetClassifier on brain activity preceding movement to try to predict upcoming actions (A or B). As expected, the fitted classifier returns coefficient maps that are sparse... |
| Mar 10, 2019 |
Dcm2nii: Problem with slice-timing metadata extraction I have Philips data that dcm2niix Nov’18 version also isn’t extracting slice timing information from ? I can look at which dicom fields have to be there if someone points me to... |
| Mar 10, 2019 |
Philips field map output by dcm2niix Any pointers here ? I am happy to provide more details if needed. |
| Mar 10, 2019 |
Error using FSL's mcflirt with mean_img in Nipype Update:I think the problem is in using FSL 6.0, in which the output file of the -meanvol option is created without the redundant “.nii” or “.nii.gz” suffix inside the file... |
| Mar 10, 2019 |
GSoC Project Idea 1: Accessible High-Performance Computing with CBRAIN Hi everyone,I’m Yoshi, a CS undergrad from National University of Singapore. I also find this project very interesting because building a Python library to make a service more accessible... |
| Mar 9, 2019 |
DataSink to DropBox via api Hello,Just wondering if there has been any discussion or effort toward a DataSink modification or separate interface for sending outputs to DropBox via their python SDK in a similar... |
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