ASHS: Automatic Segmentation of Hippocampal Subfields

ASHS is a software package for automatic segmentation of hippocampal subfields in MRI scans. ASHS requires a T1-weighted scan and an oblique coronal T2-weighted scan with high in-plane resolution. ASHS will automatically label main hippocampal subfields and medial temporal lobe subregions. ASHS is easy to train for other brain segmentation applications as well.

For details, see the ASHS documentation: https://sites.google.com/site/hipposubfi...
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Specifications

License:GNU General Public License (GPL)
Development Status:5 - Production/Stable/Mature
Domain:MR
Environment:Console (Text Based)
Intended Audience:End Users
Natural Language:English
Operating System:Linux
Programming Language:C++, sh/bash
Supported Data Format:NIfTI-1

Associations

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Recent Activity

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File Activity

UMC Utrecht 7T ASHS Atlas: ASHS 1.0 Compatible Atlas release

ashs_atlas_umcutrecht_7t_20170810.tar posted by Paul Yushkevich on Sep 15

File Activity

Penn Temporal Lobe Epilepsy T1-MRI Whole Hippocampus ASHS Atlas: ASHS 1.0 Compatible Atlas release

ashs_atlas_penntle_hippo_20170915.tar posted by Paul Yushkevich on Sep 15

File Activity

Penn Memory Center 3T ASHS Atlas: ASHS 1.0 Compatible Atlas release

ashs_atlas_upennpmc_20170810.tar posted by Paul Yushkevich on Sep 15

File Activity

fast-ashs: v1.0.0 (September 2017) release

ashs-fastashs-20170915.zip posted by Paul Yushkevich on Sep 15

File Activity

Penn Memory Center 3T ASHS Atlas: Atlas compatible with fast ASHS release

ashs_atlas_upennpmc_20161128.tar posted by Paul Yushkevich on Feb 23

File Activity

fast-ashs: February 2017 release

ashs-fastashs-20170223.zip posted by Paul Yushkevich on Feb 23

File Activity

fast-ashs: Development Version release

github link posted by Paul Yushkevich on Jul 20, 2016

File Activity

UMC Utrecht 7T ASHS Atlas: Atlas compatible with original (slow) ASHS release

atlas-UMCUtrecht-7t-20160714.tgz posted by Paul Yushkevich on Jul 14, 2016

File Activity

Penn Memory Center 3T ASHS Atlas: Atlas compatible with original (slow) ASHS release

ashs_atlas_upennpmc_mprage_20140416.tar posted by Paul Yushkevich on Oct 29, 2015

Tracker Activity

Bugs tracker

Inconsistent segmentations cause failure in stage 4 of ashs_train posted by Paul Yushkevich on Sep 3, 2014