Robust Brain Extraction (ROBEX)
- work well on certain datasets but fail on others.
- require case-specific parameter tuning
ROBEX aims for robust skull-stripping across datasets with no parameter settings. It fits a triangular mesh, constrained by a shape model, to the probabilistic output of a supervised brain boundary classifier. Because the shape model cannot perfectly accommodate unseen cases, a small free deformation is subsequently allowed. The deformation is optimized using graph cuts.
The method ROBEX is based on was published in IEEE Transactions on Medical Imaging; please visit my website http://www.jeiglesias.com to download the paper.
Specifications
Recent Activity - Documents
Robust skull stripping of clinical glioblastoma multiforme data. posted by NITRC Moderator on Dec 16, 2017
Recent Activity - Forums
runROBEX with BSD or OS X (readlink -f issue) posted by John Muschelli on Sep 18, 2017
License of ROBEX source code posted by Stefan Zellmann on Aug 2, 2017
runROBEX with BSD or OS X (readlink -f issue) posted by LabNuero CogDevel on Jul 31, 2017
ROBEX installation for windows 32-bit posted by tannaz akbarpour on Jun 9, 2017
RE: Using ROBEX for animal MRI brain extraction posted by Gamal Akabani on Nov 26, 2016
Using ROBEX for animal MRI brain extraction posted by Daniel Stolzberg on Apr 10, 2016
ROBEX Installation problems posted by Ferhat ZIDANE on Feb 23, 2016
ROBEX Strange Results posted by Roberto Souza on Dec 3, 2015
Installation Issues posted by Brittany Reiche on Nov 14, 2014
RE: ROBEX terminates in an unusual way after 2.2c posted by H. neb on Oct 27, 2014
Recent Activity - Files
robex1.2-linux64: ROBEX 1.2, linux 64 bits release
ROBEXv12.linux64.tar.gz posted by Juan Eugenio Iglesias on Nov 14, 2013
robex1.2-win: ROBEX 1.2, Windows release
ROBEXv12.win.zip posted by Juan Eugenio Iglesias on Nov 14, 2013
robex1.1-win: ROBEX 1.1, Windows release
ROBEXv11.win.zip posted by Juan Eugenio Iglesias on May 21, 2013
robex1.1-linux64: ROBEX 1.1, linux 64 bits release
ROBEXv11.linux64.tar.gz posted by Juan Eugenio Iglesias on May 21, 2013