NITRC: Electrophysiology Analysis Toolkit (Elephant): PubMed Mentions: Display Document

PubMed Mentions

The links below are to publications on PubMed referring to Electrophysiology Analysis Toolkit (Elephant). This list is gathered weekly from PubMed automatically and was last updated on April 4, 2026.

Publication/References
ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains. Description: Torre, Emiliano, et al. ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains. ''PLoS Comput Biol''. 2016 Jul; '''12''' (7):e1004939
PRANAS: A New Platform for Retinal Analysis and Simulation. Description: Cessac, Bruno, et al. PRANAS: A New Platform for Retinal Analysis and Simulation. ''Front Neuroinform''. 2017; '''11''': 49
Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection. Description: Hagen, Espen, et al. Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection. ''J Neurosci''. 2017 May 17; '''37''' (20):5123-5143
NeoAnalysis: a Python-based toolbox for quick electrophysiological data processing and analysis. Description: Zhang, Bo, et al. NeoAnalysis: a Python-based toolbox for quick electrophysiological data processing and analysis. ''Biomed Eng Online''. 2017 Nov 13; '''16''' (1):129
Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. Description: Gutzen, Robin, et al. Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. ''Front Neuroinform''. 2018; '''12''': 90
Rigorous Neural Network Simulations: A Model Substantiation Methodology for Increasing the Correctness of Simulation Results in the Absence of Experimental Validation Data. Description: Trensch, Guido, et al. Rigorous Neural Network Simulations: A Model Substantiation Methodology for Increasing the Correctness of Simulation Results in the Absence of Experimental Validation Data. ''Front Neuroinform''. 2018; '''12''': 81
Massively parallel recordings in macaque motor cortex during an instructed delayed reach-to-grasp task. Description: Brochier, Thomas, et al. Massively parallel recordings in macaque motor cortex during an instructed delayed reach-to-grasp task. ''Sci Data''. 2018 Apr 10; '''5''': 180055
*28th Annual Computational Neuroscience Meeting: CNS2019.** Description: 28th Annual Computational Neuroscience Meeting: CNS*2019. ''BMC Neurosci''. 2019 Nov 14; '''20''' (Suppl 1):56
Acceleration of the SPADE Method Using a Custom-Tailored FP-Growth Implementation. Description: Porrmann, Florian, et al. Acceleration of the SPADE Method Using a Custom-Tailored FP-Growth Implementation. ''Front Neuroinform''. 2021; '''15''': 723406
Dopaminergic and Cholinergic Modulation of Large Scale Networks in silico Using Snudda. Description: Frost Nylen, Johanna, et al. Dopaminergic and Cholinergic Modulation of Large Scale Networks in silico Using Snudda. ''Front Neural Circuits''. 2021; '''15''': 748989
Tracking cell lineages in 3D by incremental deep learning. Description: Sugawara, Ko, et al. Tracking cell lineages in 3D by incremental deep learning. ''Elife''. 2022 Jan 6; '''11''':
1024-channel electrophysiological recordings in macaque V1 and V4 during resting state. Description: Chen, Xing, et al. 1024-channel electrophysiological recordings in macaque V1 and V4 during resting state. ''Sci Data''. 2022 Mar 11; '''9''' (1):77
Visual-area-specific tonic modulation of GABA release by endocannabinoids sets the activity and coordination of neocortical principal neurons. Description: Koukouli, Fani, et al. Visual-area-specific tonic modulation of GABA release by endocannabinoids sets the activity and coordination of neocortical principal neurons. ''Cell Rep''. 2022 Aug 23; '''40''' (8):111202
Phase information is conserved in sparse, synchronous population-rate-codes via phase-to-rate recoding. Description: Muller-Komorowska, Daniel, et al. Phase information is conserved in sparse, synchronous population-rate-codes via phase-to-rate recoding. ''Nat Commun''. 2023 Sep 30; '''14''' (1):6106
A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets. Description: Gutzen, Robin, et al. A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets. ''Cell Rep Methods''. 2024 Jan 22; '''4''' (1):100681
kCSD-python, reliable current source density estimation with quality control. Description: Chintaluri, Chaitanya, et al. kCSD-python, reliable current source density estimation with quality control. ''PLoS Comput Biol''. 2024 Mar; '''20''' (3):e1011941
Facilitating the Sharing of Electrophysiology Data Analysis Results Through In-Depth Provenance Capture. Description: Kohler, Cristiano A, et al. Facilitating the Sharing of Electrophysiology Data Analysis Results Through In-Depth Provenance Capture. ''eNeuro''. 2024 Jun; '''11''' (6):
An electrodiffusive network model with multicompartmental neurons and synaptic connections. Description: Saetra, Marte J, et al. An electrodiffusive network model with multicompartmental neurons and synaptic connections. ''PLoS Comput Biol''. 2024 Nov; '''20''' (11):e1012114
Community-based reconstruction and simulation of a full-scale model of the rat hippocampus CA1 region. Description: Romani, Armando, et al. Community-based reconstruction and simulation of a full-scale model of the rat hippocampus CA1 region. ''PLoS Biol''. 2024 Nov; '''22''' (11):e3002861
Nuclear instance segmentation and tracking for preimplantation mouse embryos. Description: Nunley, Hayden, et al. Nuclear instance segmentation and tracking for preimplantation mouse embryos. ''Development''. 2024 Nov 1; '''151''' (21):
Volumetric trans-scale imaging of massive quantity of heterogeneous cell populations in centimeter-wide tissue and embryo. Description: Ichimura, Taro, et al. Volumetric trans-scale imaging of massive quantity of heterogeneous cell populations in centimeter-wide tissue and embryo. ''Elife''. 2025 Feb 3; '''13''':
Protocol for an economic evaluation alongside a natural experiment to evaluate the impact of later trading hours for bars and clubs in the night-time economy in Scotland: The ELEPHANT study. Description: Sheikh, Nurnabi, et al. Protocol for an economic evaluation alongside a natural experiment to evaluate the impact of later trading hours for bars and clubs in the night-time economy in Scotland: The ELEPHANT study. ''BMJ Open''. 2025 May 14; '''15''' (5):e095241
Improving data sharing and knowledge transfer via the Neuroelectrophysiology Analysis Ontology (NEAO). Description: Kohler, Cristiano A, et al. Improving data sharing and knowledge transfer via the Neuroelectrophysiology Analysis Ontology (NEAO). ''Sci Data''. 2025 May 29; '''12''' (1):907
Reproducible Human Neural Circuits Printed with Single-Cell Precision Reveal the Functional Roles of Ephaptic Coupling. Description: Striebel, Johannes, et al. Reproducible Human Neural Circuits Printed with Single-Cell Precision Reveal the Functional Roles of Ephaptic Coupling. ''ACS Nano''. 2025 Nov 11; '''19''' (44):38457-38471
Multi-timescale Rhythmic Dynamics in Rostral Ventromedial Medulla Neurons. Description: Ashworth, Carl, et al. Multi-timescale Rhythmic Dynamics in Rostral Ventromedial Medulla Neurons. ''bioRxiv''. 2025 Dec 17;