PubMed Mentions
The links below are to publications on PubMed referring to Electrophysiology Analysis Toolkit (Elephant). This list is gathered weekly from PubMed automatically.
| Publication/References | |
| ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains. Description: Torre, Emiliano, et al. ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains. ''PLoS Comput Biol''. 2016 Jul; '''12''' (7):e1004939 | |
| PRANAS: A New Platform for Retinal Analysis and Simulation. Description: Cessac, Bruno, et al. PRANAS: A New Platform for Retinal Analysis and Simulation. ''Front Neuroinform''. 2017; '''11''': 49 | |
| Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection. Description: Hagen, Espen, et al. Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection. ''J Neurosci''. 2017 May 17; '''37''' (20):5123-5143 | |
| NeoAnalysis: a Python-based toolbox for quick electrophysiological data processing and analysis. Description: Zhang, Bo, et al. NeoAnalysis: a Python-based toolbox for quick electrophysiological data processing and analysis. ''Biomed Eng Online''. 2017 Nov 13; '''16''' (1):129 | |
| Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. Description: Gutzen, Robin, et al. Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. ''Front Neuroinform''. 2018; '''12''': 90 | |
| Rigorous Neural Network Simulations: A Model Substantiation Methodology for Increasing the Correctness of Simulation Results in the Absence of Experimental Validation Data. Description: Trensch, Guido, et al. Rigorous Neural Network Simulations: A Model Substantiation Methodology for Increasing the Correctness of Simulation Results in the Absence of Experimental Validation Data. ''Front Neuroinform''. 2018; '''12''': 81 | |
| Massively parallel recordings in macaque motor cortex during an instructed delayed reach-to-grasp task. Description: Brochier, Thomas, et al. Massively parallel recordings in macaque motor cortex during an instructed delayed reach-to-grasp task. ''Sci Data''. 2018 Apr 10; '''5''': 180055 | |
| 28th Annual Computational Neuroscience Meeting: CNS*2019. Description: 28th Annual Computational Neuroscience Meeting: CNS*2019. ''BMC Neurosci''. 2019 Nov 14; '''20''' (Suppl 1):56 | |
| Acceleration of the SPADE Method Using a Custom-Tailored FP-Growth Implementation. Description: Porrmann, Florian, et al. Acceleration of the SPADE Method Using a Custom-Tailored FP-Growth Implementation. ''Front Neuroinform''. 2021; '''15''': 723406 | |
| Dopaminergic and Cholinergic Modulation of Large Scale Networks in silico Using Snudda. Description: Frost Nylen, Johanna, et al. Dopaminergic and Cholinergic Modulation of Large Scale Networks in silico Using Snudda. ''Front Neural Circuits''. 2021; '''15''': 748989 | |
| Tracking cell lineages in 3D by incremental deep learning. Description: Sugawara, Ko, et al. Tracking cell lineages in 3D by incremental deep learning. ''Elife''. 2022 Jan 6; '''11''': | |
| 1024-channel electrophysiological recordings in macaque V1 and V4 during resting state. Description: Chen, Xing, et al. 1024-channel electrophysiological recordings in macaque V1 and V4 during resting state. ''Sci Data''. 2022 Mar 11; '''9''' (1):77 | |
| Visual-area-specific tonic modulation of GABA release by endocannabinoids sets the activity and coordination of neocortical principal neurons. Description: Koukouli, Fani, et al. Visual-area-specific tonic modulation of GABA release by endocannabinoids sets the activity and coordination of neocortical principal neurons. ''Cell Rep''. 2022 Aug 23; '''40''' (8):111202 | |
| Phase information is conserved in sparse, synchronous population-rate-codes via phase-to-rate recoding. Description: Muller-Komorowska, Daniel, et al. Phase information is conserved in sparse, synchronous population-rate-codes via phase-to-rate recoding. ''Nat Commun''. 2023 Sep 30; '''14''' (1):6106 | |
| A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets. Description: Gutzen, Robin, et al. A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets. ''Cell Rep Methods''. 2024 Jan 22; '''4''' (1):100681 | |
| kCSD-python, reliable current source density estimation with quality control. Description: Chintaluri, Chaitanya, et al. kCSD-python, reliable current source density estimation with quality control. ''PLoS Comput Biol''. 2024 Mar; '''20''' (3):e1011941 | |
| Facilitating the Sharing of Electrophysiology Data Analysis Results Through In-Depth Provenance Capture. Description: Kohler, Cristiano A, et al. Facilitating the Sharing of Electrophysiology Data Analysis Results Through In-Depth Provenance Capture. ''eNeuro''. 2024 Jun; '''11''' (6): | |
| An electrodiffusive network model with multicompartmental neurons and synaptic connections. Description: Saetra, Marte J, et al. An electrodiffusive network model with multicompartmental neurons and synaptic connections. ''PLoS Comput Biol''. 2024 Nov; '''20''' (11):e1012114 | |
| Community-based reconstruction and simulation of a full-scale model of the rat hippocampus CA1 region. Description: Romani, Armando, et al. Community-based reconstruction and simulation of a full-scale model of the rat hippocampus CA1 region. ''PLoS Biol''. 2024 Nov; '''22''' (11):e3002861 | |
| Nuclear instance segmentation and tracking for preimplantation mouse embryos. Description: Nunley, Hayden, et al. Nuclear instance segmentation and tracking for preimplantation mouse embryos. ''Development''. 2024 Nov 1; '''151''' (21): | |
| Volumetric trans-scale imaging of massive quantity of heterogeneous cell populations in centimeter-wide tissue and embryo. Description: Ichimura, Taro, et al. Volumetric trans-scale imaging of massive quantity of heterogeneous cell populations in centimeter-wide tissue and embryo. ''Elife''. 2025 Feb 3; '''13''': | |
| Protocol for an economic evaluation alongside a natural experiment to evaluate the impact of later trading hours for bars and clubs in the night-time economy in Scotland: The ELEPHANT study. Description: Sheikh, Nurnabi, et al. Protocol for an economic evaluation alongside a natural experiment to evaluate the impact of later trading hours for bars and clubs in the night-time economy in Scotland: The ELEPHANT study. ''BMJ Open''. 2025 May 14; '''15''' (5):e095241 | |
| Improving data sharing and knowledge transfer via the Neuroelectrophysiology Analysis Ontology (NEAO). Description: Kohler, Cristiano A, et al. Improving data sharing and knowledge transfer via the Neuroelectrophysiology Analysis Ontology (NEAO). ''Sci Data''. 2025 May 29; '''12''' (1):907 |