The links below are to publications on PubMed referring to NIPY Structural and Functional Analysis. This list is gathered weekly from PubMed automatically.

Publication/References
The default modes of reading: modulation of posterior cingulate and medial prefrontal cortex connectivity associated with comprehension and task focus while reading.
Description: Smallwood, Jonathan, et al. The default modes of reading: modulation of posterior cingulate and medial prefrontal cortex connectivity associated with comprehension and task focus while reading. ''Front Hum Neurosci''. 2013; '''7''': 734
Dissociation of working memory impairments and attention-deficit/hyperactivity disorder in the brain.
Description: Mattfeld, Aaron T, et al. Dissociation of working memory impairments and attention-deficit/hyperactivity disorder in the brain. ''Neuroimage Clin''. 2016; '''10''': 274-82
Formal Models of the Network Co-occurrence Underlying Mental Operations.
Description: Bzdok, Danilo, et al. Formal Models of the Network Co-occurrence Underlying Mental Operations. ''PLoS Comput Biol''. 2016 Jun; '''12''' (6):e1004994
The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.
Description: Gorgolewski, Krzysztof J, et al. The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. ''Sci Data''. 2016 Jun 21; '''3''': 160044
Pypes: Workflows for Processing Multimodal Neuroimaging Data.
Description: Savio, Alexandre M, et al. Pypes: Workflows for Processing Multimodal Neuroimaging Data. ''Front Neuroinform''. 2017; '''11''': 25
A Systematic Relationship Between Functional Connectivity and Intracortical Myelin in the Human Cerebral Cortex.
Description: Huntenburg, Julia M, et al. A Systematic Relationship Between Functional Connectivity and Intracortical Myelin in the Human Cerebral Cortex. ''Cereb Cortex''. 2017 Feb 1; '''27''' (2):981-997
The neural representation of personally familiar and unfamiliar faces in the distributed system for face perception.
Description: Visconti di Oleggio Castello, Matteo, et al. The neural representation of personally familiar and unfamiliar faces in the distributed system for face perception. ''Sci Rep''. 2017 Sep 25; '''7''' (1):12237
Amygdala-medial prefrontal connectivity relates to stress and mental health in early childhood.
Description: Park, Anne T, et al. Amygdala-medial prefrontal connectivity relates to stress and mental health in early childhood. ''Soc Cogn Affect Neurosci''. 2018 Mar 6;
Occipitotemporal representations reflect individual differences in conceptual knowledge.
Description: Braunlich, Kurt, et al. Occipitotemporal representations reflect individual differences in conceptual knowledge. ''J Exp Psychol Gen''. 2019 Jul; '''148''' (7):1192-1203
PECLIDES Neuro: A Personalisable Clinical Decision Support System for Neurological Diseases.
Description: Muller, Tamara T, et al. PECLIDES Neuro: A Personalisable Clinical Decision Support System for Neurological Diseases. ''Front Artif Intell''. 2020; '''3''': 23
Pyneal: Open Source Real-Time fMRI Software.
Description: MacInnes, Jeff J, et al. Pyneal: Open Source Real-Time fMRI Software. ''Front Neurosci''. 2020; '''14''': 900
Pypreclin: An automatic pipeline for macaque functional MRI preprocessing.
Description: Tasserie, Jordy, et al. Pypreclin: An automatic pipeline for macaque functional MRI preprocessing. ''Neuroimage''. 2020 Feb 15; '''207''': 116353
The effect of capsulated and noncapsulated egg-yolk-specific antibody to reduce colonization in the intestine of Salmonella enterica ssp. enterica serovar Infantis-challenged broiler chickens.
Description: Hatamzade Isfahani, Nasim, et al. The effect of capsulated and noncapsulated egg-yolk-specific antibody to reduce colonization in the intestine of Salmonella enterica ssp. enterica serovar Infantis-challenged broiler chickens. ''Poult Sci''. 2020 Mar; '''99''' (3):1387-1394
Influences of affective context on amygdala functional connectivity during cognitive control from adolescence through adulthood.
Description: Ravindranath, Orma, et al. Influences of affective context on amygdala functional connectivity during cognitive control from adolescence through adulthood. ''Dev Cogn Neurosci''. 2020 Aug 14; '''45''': 100836
Systemic inflammation is associated with differential neural reactivity and connectivity to affective images.
Description: Alvarez, Gabriella M, et al. Systemic inflammation is associated with differential neural reactivity and connectivity to affective images. ''Soc Cogn Affect Neurosci''. 2020 Nov 10; '''15''' (10):1024-1033
Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset.
Description: Yotsutsuji, Sunao, et al. Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset. ''Front Neuroinform''. 2021; '''15''': 577451
Neural Correlates of Long-Term Memory Enhancement Following Retrieval Practice.
Description: Marin-Garcia, Eugenia, et al. Neural Correlates of Long-Term Memory Enhancement Following Retrieval Practice. ''Front Hum Neurosci''. 2021; '''15''': 584560
Early childhood stress is associated with blunted development of ventral tegmental area functional connectivity.
Description: Park, Anne T, et al. Early childhood stress is associated with blunted development of ventral tegmental area functional connectivity. ''Dev Cogn Neurosci''. 2021 Feb; '''47''': 100909
Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experience.
Description: Chang, Luke J, et al. Endogenous variation in ventromedial prefrontal cortex state dynamics during naturalistic viewing reflects affective experience. ''Sci Adv''. 2021 Apr; '''7''' (17):
Hyperrealistic neural decoding for reconstructing faces from fMRI activations via the GAN latent space.
Description: Dado, Thirza, et al. Hyperrealistic neural decoding for reconstructing faces from fMRI activations via the GAN latent space. ''Sci Rep''. 2022 Jan 7; '''12''' (1):141
Motor sequences; separating the sequence from the motor. A longitudinal rsfMRI study.
Description: Jager, Anna-Thekla P, et al. Motor sequences; separating the sequence from the motor. A longitudinal rsfMRI study. ''Brain Struct Funct''. 2022 Apr; '''227''' (3):793-807
Orthogonal representations for robust context-dependent task performance in brains and neural networks.
Description: Flesch, Timo, et al. Orthogonal representations for robust context-dependent task performance in brains and neural networks. ''Neuron''. 2022 Apr 6; '''110''' (7):1258-1270.e11
Early stressful experiences are associated with reduced neural responses to naturalistic emotional and social content in children.
Description: Park, Anne T, et al. Early stressful experiences are associated with reduced neural responses to naturalistic emotional and social content in children. ''Dev Cogn Neurosci''. 2022 Sep 16; '''57''': 101152
Distinct roles for the anterior temporal lobe and angular gyrus in the spatiotemporal cortical semantic network.
Description: Farahibozorg, Seyedeh-Rezvan, et al. Distinct roles for the anterior temporal lobe and angular gyrus in the spatiotemporal cortical semantic network. ''Cereb Cortex''. 2022 Oct 8; '''32''' (20):4549-4564
Pubertal development underlies optimization of inhibitory control through specialization of ventrolateral prefrontal cortex.
Description: Ravindranath, Orma, et al. Pubertal development underlies optimization of inhibitory control through specialization of ventrolateral prefrontal cortex. ''Dev Cogn Neurosci''. 2022 Oct 14; '''58''': 101162
Extensive topographic remapping and functional sharpening in the adult rat visual pathway upon first visual experience.
Description: Carvalho, Joana, et al. Extensive topographic remapping and functional sharpening in the adult rat visual pathway upon first visual experience. ''PLoS Biol''. 2023 Aug; '''21''' (8):e3002229
Voxel-wise Fusion of Resting fMRI Networks and Gray Matter Volume for Alzheimer's Disease Classification using Deep Multimodal Learning.
Description: Itkyal, Vaibhavi S, et al. Voxel-wise Fusion of Resting fMRI Networks and Gray Matter Volume for Alzheimer's Disease Classification using Deep Multimodal Learning. ''Res Sq''. 2023 Dec 13;
Reward-based option competition in human dorsal stream and transition from stochastic exploration to exploitation in continuous space.
Description: Hallquist, Michael N, et al. Reward-based option competition in human dorsal stream and transition from stochastic exploration to exploitation in continuous space. ''Sci Adv''. 2024 Feb 23; '''10''' (8):eadj2219