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Frequently Asked Questions
Description: Frequently Asked Questions (note that this is included in the main documentation).
Updated: Apr 28, 2015
MRtrix documentation
Description: This is the main documentation for MRtrix (note that this is also included in the software download).
Updated: Apr 28, 2015
PubMed Mentions ( 99 )+
The connectome mapper: an open-source processing pipeline to map connectomes with MRI.
Description: Daducci, Alessandro, et al. The connectome mapper: an open-source processing pipeline to map connectomes with MRI. ''PLoS One''. 2012; '''7''' (12):e48121
Updated: Sep 21, 2019
k-space and q-space: combining ultra-high spatial and angular resolution in diffusion imaging using ZOOPPA at 7 T.
Description: Heidemann, Robin M, et al. k-space and q-space: combining ultra-high spatial and angular resolution in diffusion imaging using ZOOPPA at 7 T. ''Neuroimage''. 2012 Apr 2; '''60''' (2):967-78
Updated: Oct 12, 2019
A hitchhiker's guide to diffusion tensor imaging.
Description: Soares, Jose M, et al. A hitchhiker's guide to diffusion tensor imaging. ''Front Neurosci''. 2013; '''7''': 31
Updated: Sep 21, 2019
Beyond cytoarchitectonics: the internal and external connectivity structure of the caudate nucleus.
Description: Kotz, Sonja A, et al. Beyond cytoarchitectonics: the internal and external connectivity structure of the caudate nucleus. ''PLoS One''. 2013; '''8''' (7):e70141
Updated: Sep 21, 2019
Real-time multi-peak tractography for instantaneous connectivity display.
Description: Chamberland, Maxime, et al. Real-time multi-peak tractography for instantaneous connectivity display. ''Front Neuroinform''. 2014; '''8''': 59
Updated: Sep 21, 2019
Layer-specific intracortical connectivity revealed with diffusion MRI.
Description: Leuze, Christoph W U, et al. Layer-specific intracortical connectivity revealed with diffusion MRI. ''Cereb Cortex''. 2014 Feb; '''24''' (2):328-39
Updated: Sep 21, 2019
Plausibility Tracking: a method to evaluate anatomical connectivity and microstructural properties along fiber pathways.
Description: Schreiber, Jan, et al. Plausibility Tracking: a method to evaluate anatomical connectivity and microstructural properties along fiber pathways. ''Neuroimage''. 2014 Apr 15; '''90''': 163-78
Updated: Sep 21, 2019
Beyond fractional anisotropy: extraction of bundle-specific structural metrics from crossing fiber models.
Description: Riffert, Till W, et al. Beyond fractional anisotropy: extraction of bundle-specific structural metrics from crossing fiber models. ''Neuroimage''. 2014 Oct 15; '''100''': 176-91
Updated: Sep 21, 2019
Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI.
Description: Cheng, Jian, et al. Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI. ''Neuroimage''. 2014 Nov 1; '''101''': 750-64
Updated: Sep 21, 2019
Intra-subject reliability of the high-resolution whole-brain structural connectome.
Description: Besson, Pierre, et al. Intra-subject reliability of the high-resolution whole-brain structural connectome. ''Neuroimage''. 2014 Nov 15; '''102 Pt 2''': 283-93
Updated: Sep 21, 2019
Motor pathway degeneration in young ataxia telangiectasia patients: A diffusion tractography study.
Description: Sahama, Ishani, et al. Motor pathway degeneration in young ataxia telangiectasia patients: A diffusion tractography study. ''Neuroimage Clin''. 2015; '''9''': 206-15
Updated: Sep 21, 2019
Probabilistic MRI tractography of the optic radiation using constrained spherical deconvolution: a feasibility study.
Description: Lim, Jeremy C, et al. Probabilistic MRI tractography of the optic radiation using constrained spherical deconvolution: a feasibility study. ''PLoS One''. 2015; '''10''' (3):e0118948
Updated: Sep 21, 2019
Structural connectivity of the anterior cingulate in children with unilateral cerebral palsy due to white matter lesions.
Description: Scheck, Simon M, et al. Structural connectivity of the anterior cingulate in children with unilateral cerebral palsy due to white matter lesions. ''Neuroimage Clin''. 2015; '''9''': 498-505
Updated: Sep 21, 2019
Orientation dependence of magnetization transfer parameters in human white matter.
Description: Pampel, Andre, et al. Orientation dependence of magnetization transfer parameters in human white matter. ''Neuroimage''. 2015 Jul 1; '''114''': 136-46
Updated: Oct 12, 2019
Brain tissue compartment density estimated using diffusion-weighted MRI yields tissue parameters consistent with histology.
Description: Sepehrband, Farshid, et al. Brain tissue compartment density estimated using diffusion-weighted MRI yields tissue parameters consistent with histology. ''Hum Brain Mapp''. 2015 Sep; '''36''' (9):3687-702
Updated: Sep 21, 2019
Validation of tractography: Comparison with manganese tracing.
Description: Knosche, Thomas R, et al. Validation of tractography: Comparison with manganese tracing. ''Hum Brain Mapp''. 2015 Oct; '''36''' (10):4116-34
Updated: Sep 21, 2019
Contralateral cerebello-thalamo-cortical pathways with prominent involvement of associative areas in humans in vivo.
Description: Palesi, Fulvia, et al. Contralateral cerebello-thalamo-cortical pathways with prominent involvement of associative areas in humans in vivo. ''Brain Struct Funct''. 2015 Nov; '''220''' (6):3369-84
Updated: Sep 21, 2019
A Direct Cortico-Nigral Pathway as Revealed by Constrained Spherical Deconvolution Tractography in Humans.
Description: Cacciola, Alberto, et al. A Direct Cortico-Nigral Pathway as Revealed by Constrained Spherical Deconvolution Tractography in Humans. ''Front Hum Neurosci''. 2016; '''10''': 374
Updated: Sep 21, 2019
A Sensitive and Automatic White Matter Fiber Tracts Model for Longitudinal Analysis of Diffusion Tensor Images in Multiple Sclerosis.
Description: Stamile, Claudio, et al. A Sensitive and Automatic White Matter Fiber Tracts Model for Longitudinal Analysis of Diffusion Tensor Images in Multiple Sclerosis. ''PLoS One''. 2016; '''11''' (5):e0156405
Updated: Sep 21, 2019
Assessing White Matter Microstructure in Brain Regions with Different Myelin Architecture Using MRI.
Description: Groeschel, Samuel, et al. Assessing White Matter Microstructure in Brain Regions with Different Myelin Architecture Using MRI. ''PLoS One''. 2016; '''11''' (11):e0167274
Updated: Sep 21, 2019
In vivo Exploration of the Connectivity between the Subthalamic Nucleus and the Globus Pallidus in the Human Brain Using Multi-Fiber Tractography.
Description: Pujol, Sonia, et al. In vivo Exploration of the Connectivity between the Subthalamic Nucleus and the Globus Pallidus in the Human Brain Using Multi-Fiber Tractography. ''Front Neuroanat''. 2016; '''10''': 119
Updated: Sep 21, 2019
Multisite, multimodal neuroimaging of chronic urological pelvic pain: Methodology of the MAPP Research Network.
Description: Alger, Jeffry R, et al. Multisite, multimodal neuroimaging of chronic urological pelvic pain: Methodology of the MAPP Research Network. ''Neuroimage Clin''. 2016; '''12''': 65-77
Updated: Sep 21, 2019
Surface-Based fMRI-Driven Diffusion Tractography in the Presence of Significant Brain Pathology: A Study Linking Structure and Function in Cerebral Palsy.
Description: Reid, Lee B, et al. Surface-Based fMRI-Driven Diffusion Tractography in the Presence of Significant Brain Pathology: A Study Linking Structure and Function in Cerebral Palsy. ''PLoS One''. 2016; '''11''' (8):e0159540
Updated: Sep 21, 2019
In vivo mapping of macroscopic neuronal projections in the mouse hippocampus using high-resolution diffusion MRI.
Description: Wu, Dan, et al. In vivo mapping of macroscopic neuronal projections in the mouse hippocampus using high-resolution diffusion MRI. ''Neuroimage''. 2016 Jan 15; '''125''': 84-93
Updated: Sep 21, 2019
Early Idiopathic Normal Pressure Hydrocephalus Patients With Neuropsychological Impairment Are Associated With Increased Fractional Anisotropy in the Anterior Thalamic Nucleus.
Description: Chen, Yung-Chieh, et al. Early Idiopathic Normal Pressure Hydrocephalus Patients With Neuropsychological Impairment Are Associated With Increased Fractional Anisotropy in the Anterior Thalamic Nucleus. ''Medicine (Baltimore)''. 2016 May; '''95''' (19):e3636
Updated: Sep 21, 2019
Behavioral, blood, and magnetic resonance imaging biomarkers of experimental mild traumatic brain injury.
Description: Wright, David K, et al. Behavioral, blood, and magnetic resonance imaging biomarkers of experimental mild traumatic brain injury. ''Sci Rep''. 2016 Jun 28; '''6''': 28713
Updated: Sep 21, 2019
Red nucleus connectivity as revealed by constrained spherical deconvolution tractography.
Description: Milardi, Demetrio, et al. Red nucleus connectivity as revealed by constrained spherical deconvolution tractography. ''Neurosci Lett''. 2016 Jul 28; '''626''': 68-73
Updated: Sep 21, 2019
A Connectomic Analysis of the Human Basal Ganglia Network.
Description: Cacciola, Alberto, et al. A Connectomic Analysis of the Human Basal Ganglia Network. ''Front Neuroanat''. 2017; '''11''': 85
Updated: Sep 21, 2019
Improvement in White Matter Tract Reconstruction with Constrained Spherical Deconvolution and Track Density Mapping in Low Angular Resolution Data: A Pediatric Study and Literature Review.
Description: Toselli, Benedetta, et al. Improvement in White Matter Tract Reconstruction with Constrained Spherical Deconvolution and Track Density Mapping in Low Angular Resolution Data: A Pediatric Study and Literature Review. ''Front Pediatr''. 2017; '''5''': 182
Updated: Sep 21, 2019
Multimodal Imaging in a Patient with Hemidystonia Responsive to GPi Deep Brain Stimulation.
Description: Sidiropoulos, Christos, et al. Multimodal Imaging in a Patient with Hemidystonia Responsive to GPi Deep Brain Stimulation. ''Case Rep Neurol Med''. 2017; '''2017''': 9653520
Updated: Sep 21, 2019
The Olfactory System Revealed: Non-Invasive Mapping by using Constrained Spherical Deconvolution Tractography in Healthy Humans.
Description: Milardi, Demetrio, et al. The Olfactory System Revealed: Non-Invasive Mapping by using Constrained Spherical Deconvolution Tractography in Healthy Humans. ''Front Neuroanat''. 2017; '''11''': 32
Updated: Sep 21, 2019
White matter integrity of the medial forebrain bundle and attention and working memory deficits following traumatic brain injury.
Description: Owens, Jacqueline A, et al. White matter integrity of the medial forebrain bundle and attention and working memory deficits following traumatic brain injury. ''Brain Behav''. 2017 Feb; '''7''' (2):e00608
Updated: Sep 21, 2019
Microstructural visual system changes in AQP4-antibody-seropositive NMOSD.
Description: Oertel, Frederike C, et al. Microstructural visual system changes in AQP4-antibody-seropositive NMOSD. ''Neurol Neuroimmunol Neuroinflamm''. 2017 May; '''4''' (3):e334
Updated: Sep 21, 2019
Alterations in prefrontal connectivity in schizophrenia assessed using diffusion magnetic resonance imaging.
Description: Molina, Vicente, et al. Alterations in prefrontal connectivity in schizophrenia assessed using diffusion magnetic resonance imaging. ''Prog Neuropsychopharmacol Biol Psychiatry''. 2017 Jun 2; '''76''': 107-115
Updated: Sep 21, 2019
PREDICT-CP: study protocol of implementation of comprehensive surveillance to predict outcomes for school-aged children with cerebral palsy.
Description: Boyd, Roslyn N, et al. PREDICT-CP: study protocol of implementation of comprehensive surveillance to predict outcomes for school-aged children with cerebral palsy. ''BMJ Open''. 2017 Jul 12; '''7''' (7):e014950
Updated: Sep 21, 2019
Relationships between the integrity and function of lumbar nerve roots as assessed by diffusion tensor imaging and neurophysiology.
Description: Chiou, S Y, et al. Relationships between the integrity and function of lumbar nerve roots as assessed by diffusion tensor imaging and neurophysiology. ''Neuroradiology''. 2017 Sep; '''59''' (9):893-903
Updated: Sep 21, 2019
Improvement of olfactory function after sinus surgery correlates with white matter properties measured by diffusion tensor imaging.
Description: Gullmar, Daniel, et al. Improvement of olfactory function after sinus surgery correlates with white matter properties measured by diffusion tensor imaging. ''Neuroscience''. 2017 Sep 30; '''360''': 190-196
Updated: Sep 21, 2019
Contralateral cortico-ponto-cerebellar pathways reconstruction in humans in vivo: implications for reciprocal cerebro-cerebellar structural connectivity in motor and non-motor areas.
Description: Palesi, Fulvia, et al. Contralateral cortico-ponto-cerebellar pathways reconstruction in humans in vivo: implications for reciprocal cerebro-cerebellar structural connectivity in motor and non-motor areas. ''Sci Rep''. 2017 Oct 9; '''7''' (1):12841
Updated: Sep 21, 2019
Identification of a Neurocognitive Mechanism Underpinning Awareness of Chronic Tinnitus.
Description: Trevis, Krysta J, et al. Identification of a Neurocognitive Mechanism Underpinning Awareness of Chronic Tinnitus. ''Sci Rep''. 2017 Nov 9; '''7''' (1):15220
Updated: Sep 21, 2019
Autosomal dominant cerebellar ataxias: Imaging biomarkers with high effect sizes.
Description: Adanyeguh, Isaac M, et al. Autosomal dominant cerebellar ataxias: Imaging biomarkers with high effect sizes. ''Neuroimage Clin''. 2018; '''19''': 858-867
Updated: Sep 21, 2019
Connectome analysis with diffusion MRI in idiopathic Parkinson's disease: Evaluation using multi-shell, multi-tissue, constrained spherical deconvolution.
Description: Kamagata, Koji, et al. Connectome analysis with diffusion MRI in idiopathic Parkinson's disease: Evaluation using multi-shell, multi-tissue, constrained spherical deconvolution. ''Neuroimage Clin''. 2018; '''17''': 518-529
Updated: Sep 21, 2019
Deficits of entropy modulation in schizophrenia are predicted by functional connectivity strength in the theta band and structural clustering.
Description: Gomez-Pilar, Javier, et al. Deficits of entropy modulation in schizophrenia are predicted by functional connectivity strength in the theta band and structural clustering. ''Neuroimage Clin''. 2018; '''18''': 382-389
Updated: Sep 21, 2019
Injuries to the Immature Optic Radiation Show Correlated Thinning of the Macular Ganglion Cell Layer.
Description: Lennartsson, Finn, et al. Injuries to the Immature Optic Radiation Show Correlated Thinning of the Macular Ganglion Cell Layer. ''Front Neurol''. 2018; '''9''': 321
Updated: Sep 21, 2019
Age is reflected in the Fractal Dimensionality of MRI Diffusion Based Tractography.
Description: Reishofer, Gernot, et al. Age is reflected in the Fractal Dimensionality of MRI Diffusion Based Tractography. ''Sci Rep''. 2018 Apr 3; '''8''' (1):5431
Updated: Sep 21, 2019
Minimum spanning tree analysis of the human connectome.
Description: van Dellen, Edwin, et al. Minimum spanning tree analysis of the human connectome. ''Hum Brain Mapp''. 2018 Jun; '''39''' (6):2455-2471
Updated: Sep 21, 2019
Subcortical structural connectivity of insular subregions.
Description: Ghaziri, Jimmy, et al. Subcortical structural connectivity of insular subregions. ''Sci Rep''. 2018 Jun 5; '''8''' (1):8596
Updated: Sep 21, 2019
Role of Dimensionality in Predicting the Spontaneous Behavior of the Brain Using the Classical Ising Model and the Ising Model Implemented on a Structural Connectome.
Description: Abeyasinghe, Pubuditha M, et al. Role of Dimensionality in Predicting the Spontaneous Behavior of the Brain Using the Classical Ising Model and the Ising Model Implemented on a Structural Connectome. ''Brain Connect''. 2018 Sep 4;
Updated: Sep 21, 2019
Acute Subcortical Infarcts Cause Secondary Degeneration in the Remote Non-involved Cortex and Connecting Fiber Tracts.
Description: Wei, Xiao-Er, et al. Acute Subcortical Infarcts Cause Secondary Degeneration in the Remote Non-involved Cortex and Connecting Fiber Tracts. ''Front Neurol''. 2019; '''10''': 860
Updated: Sep 21, 2019
Corticobulbar Tract Injury, Oromotor Impairment and Language Plasticity in Adolescents Born Preterm.
Description: Northam, Gemma B, et al. Corticobulbar Tract Injury, Oromotor Impairment and Language Plasticity in Adolescents Born Preterm. ''Front Hum Neurosci''. 2019; '''13''': 45
Updated: Sep 21, 2019
Fiber visualization for preoperative glioma assessment: Tractography versus local connectivity mapping.
Description: Schult, Thomas, et al. Fiber visualization for preoperative glioma assessment: Tractography versus local connectivity mapping. ''PLoS One''. 2019; '''14''' (12):e0226153
Updated: Jan 11, 2020
Papez Circuit Observed by in vivo Human Brain With 7.0T MRI Super-Resolution Track Density Imaging and Track Tracing.
Description: Choi, Sang-Han, et al. Papez Circuit Observed by in vivo Human Brain With 7.0T MRI Super-Resolution Track Density Imaging and Track Tracing. ''Front Neuroanat''. 2019; '''13''': 17
Updated: Sep 21, 2019
Quantifying nerve decussation abnormalities in the optic chiasm.
Description: Puzniak, Robert J, et al. Quantifying nerve decussation abnormalities in the optic chiasm. ''Neuroimage Clin''. 2019; '''24''': 102055
Updated: Dec 21, 2019
Functionally defined white matter of the macaque monkey brain reveals a dorso-ventral attention network.
Description: Sani, Ilaria, et al. Functionally defined white matter of the macaque monkey brain reveals a dorso-ventral attention network. ''Elife''. 2019 Jan 2; '''8''':
Updated: Sep 21, 2019
An afferent white matter pathway from the pulvinar to the amygdala facilitates fear recognition.
Description: McFadyen, Jessica, et al. An afferent white matter pathway from the pulvinar to the amygdala facilitates fear recognition. ''Elife''. 2019 Jan 16; '''8''':
Updated: Sep 21, 2019
Hemispheric Regional Based Analysis of Diffusion Tensor Imaging and Diffusion Tensor Tractography in Patients with Temporal Lobe Epilepsy and Correlation with Patient outcomes.
Description: Alizadeh, Mahdi, et al. Hemispheric Regional Based Analysis of Diffusion Tensor Imaging and Diffusion Tensor Tractography in Patients with Temporal Lobe Epilepsy and Correlation with Patient outcomes. ''Sci Rep''. 2019 Jan 18; '''9''' (1):215
Updated: Sep 21, 2019
White matter alterations and tract lateralization in children with dyslexia and isolated spelling deficits.
Description: Banfi, Chiara, et al. White matter alterations and tract lateralization in children with dyslexia and isolated spelling deficits. ''Hum Brain Mapp''. 2019 Feb 15; '''40''' (3):765-776
Updated: Sep 21, 2019
Electric stimulation of the medial forebrain bundle influences sensorimotor gaiting in humans.
Description: Panther, Patricia, et al. Electric stimulation of the medial forebrain bundle influences sensorimotor gaiting in humans. ''BMC Neurosci''. 2019 Apr 29; '''20''' (1):20
Updated: Sep 21, 2019
Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms.
Description: Tax, Chantal Mw, et al. Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms. ''Neuroimage''. 2019 Jul 15; '''195''': 285-299
Updated: Sep 21, 2019
Modeling conduction delays in the corpus callosum using MRI-measured g-ratio.
Description: Berman, S, et al. Modeling conduction delays in the corpus callosum using MRI-measured g-ratio. ''Neuroimage''. 2019 Jul 15; '''195''': 128-139
Updated: Sep 21, 2019
Dopamine D2/D3 receptor abnormalities after traumatic brain injury and their relationship to post-traumatic depression.
Description: Jolly, Amy E, et al. Dopamine D2/D3 receptor abnormalities after traumatic brain injury and their relationship to post-traumatic depression. ''Neuroimage Clin''. 2019 Jul 22; '''24''': 101950
Updated: Sep 21, 2019
The cortico-rubral and cerebello-rubral pathways are topographically organized within the human red nucleus.
Description: Cacciola, Alberto, et al. The cortico-rubral and cerebello-rubral pathways are topographically organized within the human red nucleus. ''Sci Rep''. 2019 Aug 20; '''9''' (1):12117
Updated: Sep 21, 2019
Biopsy Confirmed Glioma Recurrence Predicted by Multi-Modal Neuroimaging Metrics.
Description: Costabile, Jamie D, et al. Biopsy Confirmed Glioma Recurrence Predicted by Multi-Modal Neuroimaging Metrics. ''J Clin Med''. 2019 Aug 23; '''8''' (9):
Updated: Nov 23, 2019
MR g-ratio-weighted connectome analysis in patients with multiple sclerosis.
Description: Kamagata, Koji, et al. MR g-ratio-weighted connectome analysis in patients with multiple sclerosis. ''Sci Rep''. 2019 Sep 18; '''9''' (1):13522
Updated: Oct 12, 2019
Minor gait impairment despite white matter damage in pure small vessel disease.
Description: Finsterwalder, Sofia, et al. Minor gait impairment despite white matter damage in pure small vessel disease. ''Ann Clin Transl Neurol''. 2019 Oct; '''6''' (10):2026-2036
Updated: Nov 23, 2019
Higher body mass index is linked to altered hypothalamic microstructure.
Description: Thomas, K, et al. Higher body mass index is linked to altered hypothalamic microstructure. ''Sci Rep''. 2019 Nov 22; '''9''' (1):17373
Updated: Jan 11, 2020
Automatic Segmentation of the Dorsal Claustrum in Humans Using in vivo High-Resolution MRI.
Description: Berman, Shai, et al. Automatic Segmentation of the Dorsal Claustrum in Humans Using in vivo High-Resolution MRI. ''Cereb Cortex Commun''. 2020; '''1''' (1):tgaa062
Updated: Aug 14, 2021
Implementation of clinical tractography for pre-surgical planning of space occupying lesions: An investigation of common acquisition and post-processing methods compared to dissection studies.
Description: Ashmore, Jonathan, et al. Implementation of clinical tractography for pre-surgical planning of space occupying lesions: An investigation of common acquisition and post-processing methods compared to dissection studies. ''PLoS One''. 2020; '''15''' (4):e0231440
Updated: May 23, 2020
Pinpointing Neural Correlates of Attachment in Poly-Drug Use: A Diffusion Tensor Imaging Study.
Description: Fuchshuber, J, et al. Pinpointing Neural Correlates of Attachment in Poly-Drug Use: A Diffusion Tensor Imaging Study. ''Front Neurosci''. 2020; '''14''': 596
Updated: Jul 18, 2020
The visual white matter connecting human area prostriata and the thalamus is retinotopically organized.
Description: Kurzawski, Jan W, et al. The visual white matter connecting human area prostriata and the thalamus is retinotopically organized. ''Brain Struct Funct''. 2020 Jul; '''225''' (6):1839-1853
Updated: Jul 18, 2020
Dynamical Mechanisms of Interictal Resting-State Functional Connectivity in Epilepsy.
Description: Courtiol, Julie, et al. Dynamical Mechanisms of Interictal Resting-State Functional Connectivity in Epilepsy. ''J Neurosci''. 2020 Jul 15; '''40''' (29):5572-5588
Updated: Aug 29, 2020
Serial MRI studies over 12 months using manual and atlas-based region of interest in patients with amyotrophic lateral sclerosis.
Description: Alruwaili, Ashwag R, et al. Serial MRI studies over 12 months using manual and atlas-based region of interest in patients with amyotrophic lateral sclerosis. ''BMC Med Imaging''. 2020 Aug 3; '''20''' (1):90
Updated: Aug 29, 2020
Anatomical Characterization of the Human Structural Connectivity between the Pedunculopontine Nucleus and Globus Pallidus via Multi-Shell Multi-Tissue Tractography.
Description: Bertino, Salvatore, et al. Anatomical Characterization of the Human Structural Connectivity between the Pedunculopontine Nucleus and Globus Pallidus via Multi-Shell Multi-Tissue Tractography. ''Medicina (Kaunas)''. 2020 Sep 7; '''56''' (9):
Updated: Nov 14, 2020
Identification of a distinct association fiber tract "IPS-FG" to connect the intraparietal sulcus areas and fusiform gyrus by white matter dissection and tractography.
Description: Jitsuishi, Tatsuya, et al. Identification of a distinct association fiber tract "IPS-FG" to connect the intraparietal sulcus areas and fusiform gyrus by white matter dissection and tractography. ''Sci Rep''. 2020 Sep 23; '''10''' (1):15475
Updated: Oct 17, 2020
Childhood violence exposure and social deprivation predict adolescent amygdala-orbitofrontal cortex white matter connectivity.
Description: Goetschius, Leigh G, et al. Childhood violence exposure and social deprivation predict adolescent amygdala-orbitofrontal cortex white matter connectivity. ''Dev Cogn Neurosci''. 2020 Oct; '''45''': 100849
Updated: Oct 17, 2020
Alternative Microstructural Measures to Complement Diffusion Tensor Imaging in Migraine Studies with Standard MRI Acquisition.
Description: Planchuelo-Gomez, Alvaro, et al. Alternative Microstructural Measures to Complement Diffusion Tensor Imaging in Migraine Studies with Standard MRI Acquisition. ''Brain Sci''. 2020 Oct 6; '''10''' (10):
Updated: Nov 14, 2020
Concordance in parent and offspring cortico-basal ganglia white matter connectivity varies by parental history of major depressive disorder and early parental care.
Description: Abraham, Eyal, et al. Concordance in parent and offspring cortico-basal ganglia white matter connectivity varies by parental history of major depressive disorder and early parental care. ''Soc Cogn Affect Neurosci''. 2020 Oct 8; '''15''' (8):889-903
Updated: Nov 14, 2020
Maternal cortisol is associated with neonatal amygdala microstructure and connectivity in a sexually dimorphic manner.
Description: Stoye, David Q, et al. Maternal cortisol is associated with neonatal amygdala microstructure and connectivity in a sexually dimorphic manner. ''Elife''. 2020 Nov 24; '''9''':
Updated: Dec 26, 2020
Data-science ready, multisite, human diffusion MRI white-matter-tract statistics.
Description: Lerma-Usabiaga, Garikoitz, et al. Data-science ready, multisite, human diffusion MRI white-matter-tract statistics. ''Sci Data''. 2020 Nov 30; '''7''' (1):422
Updated: Dec 26, 2020
Neural diffusivity and pre-emptive epileptic seizure intervention.
Description: Fagerholm, Erik D, et al. Neural diffusivity and pre-emptive epileptic seizure intervention. ''PLoS Comput Biol''. 2020 Dec; '''16''' (12):e1008448
Updated: Jan 23, 2021
Axon morphology is modulated by the local environment and impacts the noninvasive investigation of its structure-function relationship.
Description: Andersson, Mariam, et al. Axon morphology is modulated by the local environment and impacts the noninvasive investigation of its structure-function relationship. ''Proc Natl Acad Sci U S A''. 2020 Dec 29; '''117''' (52):33649-33659
Updated: Feb 13, 2021
Case Report: An MRI Traumatic Brain Injury Longitudinal Case Study at 7 Tesla: Pre- and Post-injury Structural Network and Volumetric Reorganization and Recovery.
Description: Brown, Stephanie S G, et al. Case Report: An MRI Traumatic Brain Injury Longitudinal Case Study at 7 Tesla: Pre- and Post-injury Structural Network and Volumetric Reorganization and Recovery. ''Front Neurol''. 2021; '''12''': 631330
Updated: Aug 14, 2021
Fixel-Based Analysis of White Matter Degeneration in Patients With Progressive Supranuclear Palsy or Multiple System Atrophy, as Compared to Parkinson's Disease.
Description: Nguyen, Thanh-Thao, et al. Fixel-Based Analysis of White Matter Degeneration in Patients With Progressive Supranuclear Palsy or Multiple System Atrophy, as Compared to Parkinson's Disease. ''Front Aging Neurosci''. 2021; '''13''': 625874
Updated: May 15, 2021
Neural substrates of neuropsychological profiles in dystrophynopathies: A pilot study of diffusion tractography imaging.
Description: Biagi, Laura, et al. Neural substrates of neuropsychological profiles in dystrophynopathies: A pilot study of diffusion tractography imaging. ''PLoS One''. 2021; '''16''' (5):e0250420
Updated: Jun 19, 2021
Neural Underpinnings of Proactive Interference in Working Memory: Evidence From Patients With Unilateral Lesions.
Description: Ries, Stephanie K, et al. Neural Underpinnings of Proactive Interference in Working Memory: Evidence From Patients With Unilateral Lesions. ''Front Neurol''. 2021; '''12''': 607273
Updated: Apr 10, 2021
The human endogenous attentional control network includes a ventro-temporal cortical node.
Description: Sani, Ilaria, et al. The human endogenous attentional control network includes a ventro-temporal cortical node. ''Nat Commun''. 2021 Jan 15; '''12''' (1):360
Updated: Feb 13, 2021
Data-driven method to infer the seizure propagation patterns in an epileptic brain from intracranial electroencephalography.
Description: Sip, Viktor, et al. Data-driven method to infer the seizure propagation patterns in an epileptic brain from intracranial electroencephalography. ''PLoS Comput Biol''. 2021 Feb; '''17''' (2):e1008689
Updated: Apr 10, 2021
Collegiate athlete brain data for white matter mapping and network neuroscience.
Description: Caron, Bradley, et al. Collegiate athlete brain data for white matter mapping and network neuroscience. ''Sci Data''. 2021 Feb 11; '''8''' (1):56
Updated: Mar 20, 2021
Homologous laminar organization of the mouse and human subiculum.
Description: Bienkowski, Michael S, et al. Homologous laminar organization of the mouse and human subiculum. ''Sci Rep''. 2021 Feb 12; '''11''' (1):3729
Updated: Mar 20, 2021
White matter tracts related to memory and emotion in very preterm children.
Description: Kelly, Claire E, et al. White matter tracts related to memory and emotion in very preterm children. ''Pediatr Res''. 2021 May; '''89''' (6):1452-1460
Updated: Jun 19, 2021
Predicting outcome following mild traumatic brain injury: protocol for the longitudinal, prospective, observational Concussion Recovery (CREST) cohort study.
Description: Gozt, Aleksandra Karolina, et al. Predicting outcome following mild traumatic brain injury: protocol for the longitudinal, prospective, observational Concussion Recovery (CREST) cohort study. ''BMJ Open''. 2021 May 13; '''11''' (5):e046460
Updated: Jun 19, 2021
Statistical and Machine Learning Link Selection Methods for Brain Functional Networks: Review and Comparison.
Description: Ivanoska, Ilinka, et al. Statistical and Machine Learning Link Selection Methods for Brain Functional Networks: Review and Comparison. ''Brain Sci''. 2021 May 31; '''11''' (6):
Updated: Jul 10, 2021
Uncovering a 'sensitive window' of multisensory and motor neuroplasticity in the cerebrum and cerebellum of male and female starlings.
Description: Orije, Jasmien, et al. Uncovering a 'sensitive window' of multisensory and motor neuroplasticity in the cerebrum and cerebellum of male and female starlings. ''Elife''. 2021 Jun 7; '''10''':
Updated: Oct 16, 2021
The benefit of the diffusion kurtosis imaging in presurgical evaluation in patients with focal MR-negative epilepsy.
Description: Bartonova, Michaela, et al. The benefit of the diffusion kurtosis imaging in presurgical evaluation in patients with focal MR-negative epilepsy. ''Sci Rep''. 2021 Jul 9; '''11''' (1):14208
Updated: Oct 16, 2021
Neuroinflammation and Its Association with Cognition, Neuronal Markers and Peripheral Inflammation after Chemotherapy for Breast Cancer.
Description: Schroyen, Gwen, et al. Neuroinflammation and Its Association with Cognition, Neuronal Markers and Peripheral Inflammation after Chemotherapy for Breast Cancer. ''Cancers (Basel)''. 2021 Aug 20; '''13''' (16):
Updated: Oct 16, 2021
Parkinson's disease: deep learning with a parameter-weighted structural connectome matrix for diagnosis and neural circuit disorder investigation.
Description: Yasaka, Koichiro, et al. Parkinson's disease: deep learning with a parameter-weighted structural connectome matrix for diagnosis and neural circuit disorder investigation. ''Neuroradiology''. 2021 Sep; '''63''' (9):1451-1462
Updated: Oct 16, 2021
A detailed analysis of anatomical plausibility of crossed and uncrossed streamline rendition of the dentato-rubro-thalamic tract (DRT(T)) in a commercial stereotactic planning system.
Description: Coenen, Volker A, et al. A detailed analysis of anatomical plausibility of crossed and uncrossed streamline rendition of the dentato-rubro-thalamic tract (DRT(T)) in a commercial stereotactic planning system. ''Acta Neurochir (Wien)''. 2021 Oct; '''163''' (10):2809-2824
Updated: Oct 16, 2021
Identifying spatio-temporal seizure propagation patterns in epilepsy using Bayesian inference.
Description: Vattikonda, Anirudh N, et al. Identifying spatio-temporal seizure propagation patterns in epilepsy using Bayesian inference. ''Commun Biol''. 2021 Nov 1; '''4''' (1):1244
Updated: Dec 18, 2021
White matter degeneration revealed by fiber-specific analysis relates to recovery of hand function after stroke.
Description: Cheng, Bastian, et al. White matter degeneration revealed by fiber-specific analysis relates to recovery of hand function after stroke. ''Hum Brain Mapp''. 2021 Nov; '''42''' (16):5423-5432
Updated: Nov 13, 2021
T2-Pseudonormalization and Microstructural Characterization in Advanced Stages of Late-infantile Metachromatic Leukodystrophy.
Description: Martin, Pascal, et al. T2-Pseudonormalization and Microstructural Characterization in Advanced Stages of Late-infantile Metachromatic Leukodystrophy. ''Clin Neuroradiol''. 2021 Dec; '''31''' (4):969-980
Updated: 13 hours ago