Welcome to the collection of documents for MRtrix.

Adding Documents: Members of MRtrix may submit documents to the folders below; however, an administrator will decide whether or not to publish a document.

Deleting Documents: If you find an out-dated document, please send a request to the tool/resource administrator.

Add New Document
Show documents in: 
Folders/DocumentsAdd
Frequently Asked Questions
Description: Frequently Asked Questions (note that this is included in the main documentation).
Updated: Apr 28, 2015
MRtrix documentation
Description: This is the main documentation for MRtrix (note that this is also included in the software download).
Updated: Apr 28, 2015
PubMed Mentions ( 98 )+
INCITE: A randomised trial comparing constraint induced movement therapy and bimanual training in children with congenital hemiplegia.
Description: Boyd, Roslyn, et al. INCITE: A randomised trial comparing constraint induced movement therapy and bimanual training in children with congenital hemiplegia. ''BMC Neurol''. 2010 Jan 12; '''10''': 4
Updated: Dec 16, 2017
DFBIdb: a software package for neuroimaging data management.
Description: Adamson, Christopher L, et al. DFBIdb: a software package for neuroimaging data management. ''Neuroinformatics''. 2010 Dec; '''8''' (4):273-84
Updated: Dec 16, 2017
The connectome mapper: an open-source processing pipeline to map connectomes with MRI.
Description: Daducci, Alessandro, et al. The connectome mapper: an open-source processing pipeline to map connectomes with MRI. ''PLoS One''. 2012; '''7''' (12):e48121
Updated: Sep 21, 2019
Tract specific reproducibility of tractography based morphology and diffusion metrics.
Description: Besseling, Rene M H, et al. Tract specific reproducibility of tractography based morphology and diffusion metrics. ''PLoS One''. 2012; '''7''' (4):e34125
Updated: Dec 16, 2017
k-space and q-space: combining ultra-high spatial and angular resolution in diffusion imaging using ZOOPPA at 7 T.
Description: Heidemann, Robin M, et al. k-space and q-space: combining ultra-high spatial and angular resolution in diffusion imaging using ZOOPPA at 7 T. ''Neuroimage''. 2012 Apr 2; '''60''' (2):967-78
Updated: Oct 12, 2019
Corticospinal tract integrity and motor function following neonatal stroke: a case study.
Description: Gordon, Anne L, et al. Corticospinal tract integrity and motor function following neonatal stroke: a case study. ''BMC Neurol''. 2012 Jul 9; '''12''': 53
Updated: Dec 16, 2017
A hitchhiker's guide to diffusion tensor imaging.
Description: Soares, Jose M, et al. A hitchhiker's guide to diffusion tensor imaging. ''Front Neurosci''. 2013; '''7''': 31
Updated: Sep 21, 2019
Altered white matter architecture in BDNF met carriers.
Description: Ziegler, Erik, et al. Altered white matter architecture in BDNF met carriers. ''PLoS One''. 2013; '''8''' (7):e69290
Updated: Dec 16, 2017
Beyond cytoarchitectonics: the internal and external connectivity structure of the caudate nucleus.
Description: Kotz, Sonja A, et al. Beyond cytoarchitectonics: the internal and external connectivity structure of the caudate nucleus. ''PLoS One''. 2013; '''8''' (7):e70141
Updated: Sep 21, 2019
Computational representation of white matter fiber orientations.
Description: Ferreira da Silva, Adelino R. Computational representation of white matter fiber orientations. ''Int J Biomed Imaging''. 2013; '''2013''': 232143
Updated: Dec 16, 2017
Deterministic diffusion fiber tracking improved by quantitative anisotropy.
Description: Yeh, Fang-Cheng, et al. Deterministic diffusion fiber tracking improved by quantitative anisotropy. ''PLoS One''. 2013; '''8''' (11):e80713
Updated: Dec 16, 2017
Early detection of microstructural white matter changes associated with arterial pulsatility.
Description: Jolly, Todd A D, et al. Early detection of microstructural white matter changes associated with arterial pulsatility. ''Front Hum Neurosci''. 2013; '''7''': 782
Updated: Dec 16, 2017
High-Resolution MR Imaging of the Human Brainstem In vivo at 7 Tesla.
Description: Deistung, Andreas, et al. High-Resolution MR Imaging of the Human Brainstem In vivo at 7 Tesla. ''Front Hum Neurosci''. 2013; '''7''': 710
Updated: Dec 16, 2017
Maturation of corpus callosum anterior midbody is associated with neonatal motor function in eight preterm-born infants.
Description: Mathew, Preethi, et al. Maturation of corpus callosum anterior midbody is associated with neonatal motor function in eight preterm-born infants. ''Neural Plast''. 2013; '''2013''': 359532
Updated: Dec 16, 2017
Move it to improve it (Mitii): study protocol of a randomised controlled trial of a novel web-based multimodal training program for children and adolescents with cerebral palsy.
Description: Boyd, Roslyn N, et al. Move it to improve it (Mitii): study protocol of a randomised controlled trial of a novel web-based multimodal training program for children and adolescents with cerebral palsy. ''BMJ Open''. 2013; '''3''' (4):
Updated: Dec 16, 2017
Reduced structural connectivity between sensorimotor and language areas in rolandic epilepsy.
Description: Besseling, Rene M H, et al. Reduced structural connectivity between sensorimotor and language areas in rolandic epilepsy. ''PLoS One''. 2013; '''8''' (12):e83568
Updated: Dec 16, 2017
Sparse solution of fiber orientation distribution function by diffusion decomposition.
Description: Yeh, Fang-Cheng, et al. Sparse solution of fiber orientation distribution function by diffusion decomposition. ''PLoS One''. 2013; '''8''' (10):e75747
Updated: Dec 16, 2017
Systemic inflammation in non-demented elderly human subjects: brain microstructure and cognition.
Description: Arfanakis, Konstantinos, et al. Systemic inflammation in non-demented elderly human subjects: brain microstructure and cognition. ''PLoS One''. 2013; '''8''' (8):e73107
Updated: Dec 16, 2017
COMBIT: protocol of a randomised comparison trial of COMbined modified constraint induced movement therapy and bimanual intensive training with distributed model of standard upper limb rehabilitation in children with congenital hemiplegia.
Description: Boyd, Roslyn N, et al. COMBIT: protocol of a randomised comparison trial of COMbined modified constraint induced movement therapy and bimanual intensive training with distributed model of standard upper limb rehabilitation in children with congenital hemiplegia. ''BMC Neurol''. 2013 Jun 28; '''13''': 68
Updated: Dec 16, 2017
Impact of corticofugal fibre involvement in subcortical stroke.
Description: Phan, Thanh G, et al. Impact of corticofugal fibre involvement in subcortical stroke. ''BMJ Open''. 2013 Sep 24; '''3''' (9):e003318
Updated: Dec 16, 2017
Using in vivo probabilistic tractography to reveal two segregated dorsal 'language-cognitive' pathways in the human brain.
Description: Cloutman, Lauren L, et al. Using in vivo probabilistic tractography to reveal two segregated dorsal 'language-cognitive' pathways in the human brain. ''Brain Lang''. 2013 Nov; '''127''' (2):230-40
Updated: Dec 16, 2017
Pediatric traumatic brain injury: language outcomes and their relationship to the arcuate fasciculus.
Description: Liegeois, Frederique J, et al. Pediatric traumatic brain injury: language outcomes and their relationship to the arcuate fasciculus. ''Brain Lang''. 2013 Dec; '''127''' (3):388-98
Updated: Dec 16, 2017
Alterations in the optic radiations of very preterm children-Perinatal predictors and relationships with visual outcomes.
Description: Thompson, Deanne K, et al. Alterations in the optic radiations of very preterm children-Perinatal predictors and relationships with visual outcomes. ''Neuroimage Clin''. 2014; '''4''': 145-53
Updated: Dec 16, 2017
Consensus between pipelines in structural brain networks.
Description: Parker, Christopher S, et al. Consensus between pipelines in structural brain networks. ''PLoS One''. 2014; '''9''' (10):e111262
Updated: Dec 16, 2017
Delayed convergence between brain network structure and function in rolandic epilepsy.
Description: Besseling, Rene M H, et al. Delayed convergence between brain network structure and function in rolandic epilepsy. ''Front Hum Neurosci''. 2014; '''8''': 704
Updated: Dec 16, 2017
Dipy, a library for the analysis of diffusion MRI data.
Description: Garyfallidis, Eleftherios, et al. Dipy, a library for the analysis of diffusion MRI data. ''Front Neuroinform''. 2014; '''8''': 8
Updated: Dec 16, 2017
Functional and structural network impairment in childhood frontal lobe epilepsy.
Description: Vaessen, Maarten J, et al. Functional and structural network impairment in childhood frontal lobe epilepsy. ''PLoS One''. 2014; '''9''' (3):e90068
Updated: Dec 16, 2017
Global tractography with embedded anatomical priors for quantitative connectivity analysis.
Description: Lemkaddem, Alia, et al. Global tractography with embedded anatomical priors for quantitative connectivity analysis. ''Front Neurol''. 2014; '''5''': 232
Updated: Dec 16, 2017
Isotropic non-white matter partial volume effects in constrained spherical deconvolution.
Description: Roine, Timo, et al. Isotropic non-white matter partial volume effects in constrained spherical deconvolution. ''Front Neuroinform''. 2014; '''8''': 28
Updated: Dec 16, 2017
Neural correlates of impaired vision in adolescents born extremely preterm and/or extremely low birthweight.
Description: Kelly, Claire E, et al. Neural correlates of impaired vision in adolescents born extremely preterm and/or extremely low birthweight. ''PLoS One''. 2014; '''9''' (3):e93188
Updated: Dec 16, 2017
Real-time multi-peak tractography for instantaneous connectivity display.
Description: Chamberland, Maxime, et al. Real-time multi-peak tractography for instantaneous connectivity display. ''Front Neuroinform''. 2014; '''8''': 59
Updated: Sep 21, 2019
Using fMRI non-local means denoising to uncover activation in sub-cortical structures at 1.5 T for guided HARDI tractography.
Description: Bernier, Michael, et al. Using fMRI non-local means denoising to uncover activation in sub-cortical structures at 1.5 T for guided HARDI tractography. ''Front Hum Neurosci''. 2014; '''8''': 715
Updated: Dec 16, 2017
Anti-cytokeratin CAM5.2 recognized CK8 mainly, but not CK18: comment on "Early assessment of axillary response with 18F-FDG PET/CT during neoadjuvant chemotherapy in stage II-III breast cancer: implications for surgical management of the axilla. Anna...
Description: Chao, Wan-Ru, et al. Anti-cytokeratin CAM5.2 recognized CK8 mainly, but not CK18: comment on "Early assessment of axillary response with 18F-FDG PET/CT during neoadjuvant chemotherapy in stage II-III breast cancer: implications for surgical management of the axilla. Annals of Surgical Oncology doi: 10.1245/s10434-013-2902-0 (2013)". ''Ann Surg Oncol''. 2014 Feb; '''21''' (2):699
Updated: Dec 16, 2017
Layer-specific intracortical connectivity revealed with diffusion MRI.
Description: Leuze, Christoph W U, et al. Layer-specific intracortical connectivity revealed with diffusion MRI. ''Cereb Cortex''. 2014 Feb; '''24''' (2):328-39
Updated: Sep 21, 2019
Comparative analysis of the macroscale structural connectivity in the macaque and human brain.
Description: Goulas, Alexandros, et al. Comparative analysis of the macroscale structural connectivity in the macaque and human brain. ''PLoS Comput Biol''. 2014 Mar; '''10''' (3):e1003529
Updated: Dec 16, 2017
Plausibility Tracking: a method to evaluate anatomical connectivity and microstructural properties along fiber pathways.
Description: Schreiber, Jan, et al. Plausibility Tracking: a method to evaluate anatomical connectivity and microstructural properties along fiber pathways. ''Neuroimage''. 2014 Apr 15; '''90''': 163-78
Updated: Sep 21, 2019
Study protocol: imaging brain development in the Childhood to Adolescence Transition Study (iCATS).
Description: Simmons, Julian G, et al. Study protocol: imaging brain development in the Childhood to Adolescence Transition Study (iCATS). ''BMC Pediatr''. 2014 Apr 30; '''14''': 115
Updated: Dec 16, 2017
Mapping track density changes in nigrostriatal and extranigral pathways in Parkinson's disease.
Description: Ziegler, Erik, et al. Mapping track density changes in nigrostriatal and extranigral pathways in Parkinson's disease. ''Neuroimage''. 2014 Oct 1; '''99''': 498-508
Updated: Dec 16, 2017
Beyond fractional anisotropy: extraction of bundle-specific structural metrics from crossing fiber models.
Description: Riffert, Till W, et al. Beyond fractional anisotropy: extraction of bundle-specific structural metrics from crossing fiber models. ''Neuroimage''. 2014 Oct 15; '''100''': 176-91
Updated: Sep 21, 2019
Structural connectivity differences in left and right temporal lobe epilepsy.
Description: Besson, Pierre, et al. Structural connectivity differences in left and right temporal lobe epilepsy. ''Neuroimage''. 2014 Oct 15; '''100''': 135-44
Updated: Dec 16, 2017
Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI.
Description: Cheng, Jian, et al. Non-Negative Spherical Deconvolution (NNSD) for estimation of fiber Orientation Distribution Function in single-/multi-shell diffusion MRI. ''Neuroimage''. 2014 Nov 1; '''101''': 750-64
Updated: Sep 21, 2019
Intra-subject reliability of the high-resolution whole-brain structural connectome.
Description: Besson, Pierre, et al. Intra-subject reliability of the high-resolution whole-brain structural connectome. ''Neuroimage''. 2014 Nov 15; '''102 Pt 2''': 283-93
Updated: Sep 21, 2019
Motor pathway degeneration in young ataxia telangiectasia patients: A diffusion tractography study.
Description: Sahama, Ishani, et al. Motor pathway degeneration in young ataxia telangiectasia patients: A diffusion tractography study. ''Neuroimage Clin''. 2015; '''9''': 206-15
Updated: Sep 21, 2019
Probabilistic MRI tractography of the optic radiation using constrained spherical deconvolution: a feasibility study.
Description: Lim, Jeremy C, et al. Probabilistic MRI tractography of the optic radiation using constrained spherical deconvolution: a feasibility study. ''PLoS One''. 2015; '''10''' (3):e0118948
Updated: Sep 21, 2019
Structural connectivity of the anterior cingulate in children with unilateral cerebral palsy due to white matter lesions.
Description: Scheck, Simon M, et al. Structural connectivity of the anterior cingulate in children with unilateral cerebral palsy due to white matter lesions. ''Neuroimage Clin''. 2015; '''9''': 498-505
Updated: Sep 21, 2019
Orientation dependence of magnetization transfer parameters in human white matter.
Description: Pampel, Andre, et al. Orientation dependence of magnetization transfer parameters in human white matter. ''Neuroimage''. 2015 Jul 1; '''114''': 136-46
Updated: Oct 12, 2019
Brain tissue compartment density estimated using diffusion-weighted MRI yields tissue parameters consistent with histology.
Description: Sepehrband, Farshid, et al. Brain tissue compartment density estimated using diffusion-weighted MRI yields tissue parameters consistent with histology. ''Hum Brain Mapp''. 2015 Sep; '''36''' (9):3687-702
Updated: Sep 21, 2019
Validation of tractography: Comparison with manganese tracing.
Description: Knosche, Thomas R, et al. Validation of tractography: Comparison with manganese tracing. ''Hum Brain Mapp''. 2015 Oct; '''36''' (10):4116-34
Updated: Sep 21, 2019
Contralateral cerebello-thalamo-cortical pathways with prominent involvement of associative areas in humans in vivo.
Description: Palesi, Fulvia, et al. Contralateral cerebello-thalamo-cortical pathways with prominent involvement of associative areas in humans in vivo. ''Brain Struct Funct''. 2015 Nov; '''220''' (6):3369-84
Updated: Sep 21, 2019
A Direct Cortico-Nigral Pathway as Revealed by Constrained Spherical Deconvolution Tractography in Humans.
Description: Cacciola, Alberto, et al. A Direct Cortico-Nigral Pathway as Revealed by Constrained Spherical Deconvolution Tractography in Humans. ''Front Hum Neurosci''. 2016; '''10''': 374
Updated: Sep 21, 2019
A Sensitive and Automatic White Matter Fiber Tracts Model for Longitudinal Analysis of Diffusion Tensor Images in Multiple Sclerosis.
Description: Stamile, Claudio, et al. A Sensitive and Automatic White Matter Fiber Tracts Model for Longitudinal Analysis of Diffusion Tensor Images in Multiple Sclerosis. ''PLoS One''. 2016; '''11''' (5):e0156405
Updated: Sep 21, 2019
Assessing White Matter Microstructure in Brain Regions with Different Myelin Architecture Using MRI.
Description: Groeschel, Samuel, et al. Assessing White Matter Microstructure in Brain Regions with Different Myelin Architecture Using MRI. ''PLoS One''. 2016; '''11''' (11):e0167274
Updated: Sep 21, 2019
In vivo Exploration of the Connectivity between the Subthalamic Nucleus and the Globus Pallidus in the Human Brain Using Multi-Fiber Tractography.
Description: Pujol, Sonia, et al. In vivo Exploration of the Connectivity between the Subthalamic Nucleus and the Globus Pallidus in the Human Brain Using Multi-Fiber Tractography. ''Front Neuroanat''. 2016; '''10''': 119
Updated: Sep 21, 2019
Multisite, multimodal neuroimaging of chronic urological pelvic pain: Methodology of the MAPP Research Network.
Description: Alger, Jeffry R, et al. Multisite, multimodal neuroimaging of chronic urological pelvic pain: Methodology of the MAPP Research Network. ''Neuroimage Clin''. 2016; '''12''': 65-77
Updated: Sep 21, 2019
Surface-Based fMRI-Driven Diffusion Tractography in the Presence of Significant Brain Pathology: A Study Linking Structure and Function in Cerebral Palsy.
Description: Reid, Lee B, et al. Surface-Based fMRI-Driven Diffusion Tractography in the Presence of Significant Brain Pathology: A Study Linking Structure and Function in Cerebral Palsy. ''PLoS One''. 2016; '''11''' (8):e0159540
Updated: Sep 21, 2019
In vivo mapping of macroscopic neuronal projections in the mouse hippocampus using high-resolution diffusion MRI.
Description: Wu, Dan, et al. In vivo mapping of macroscopic neuronal projections in the mouse hippocampus using high-resolution diffusion MRI. ''Neuroimage''. 2016 Jan 15; '''125''': 84-93
Updated: Sep 21, 2019
A rare case of cerebellar agenesis: a probabilistic Constrained Spherical Deconvolution tractographic study.
Description: Mormina, Enricomaria, et al. A rare case of cerebellar agenesis: a probabilistic Constrained Spherical Deconvolution tractographic study. ''Brain Imaging Behav''. 2016 Mar; '''10''' (1):158-67
Updated: Dec 16, 2017
Early Idiopathic Normal Pressure Hydrocephalus Patients With Neuropsychological Impairment Are Associated With Increased Fractional Anisotropy in the Anterior Thalamic Nucleus.
Description: Chen, Yung-Chieh, et al. Early Idiopathic Normal Pressure Hydrocephalus Patients With Neuropsychological Impairment Are Associated With Increased Fractional Anisotropy in the Anterior Thalamic Nucleus. ''Medicine (Baltimore)''. 2016 May; '''95''' (19):e3636
Updated: Sep 21, 2019
Behavioral, blood, and magnetic resonance imaging biomarkers of experimental mild traumatic brain injury.
Description: Wright, David K, et al. Behavioral, blood, and magnetic resonance imaging biomarkers of experimental mild traumatic brain injury. ''Sci Rep''. 2016 Jun 28; '''6''': 28713
Updated: Sep 21, 2019
Red nucleus connectivity as revealed by constrained spherical deconvolution tractography.
Description: Milardi, Demetrio, et al. Red nucleus connectivity as revealed by constrained spherical deconvolution tractography. ''Neurosci Lett''. 2016 Jul 28; '''626''': 68-73
Updated: Sep 21, 2019
A Connectomic Analysis of the Human Basal Ganglia Network.
Description: Cacciola, Alberto, et al. A Connectomic Analysis of the Human Basal Ganglia Network. ''Front Neuroanat''. 2017; '''11''': 85
Updated: Sep 21, 2019
Improvement in White Matter Tract Reconstruction with Constrained Spherical Deconvolution and Track Density Mapping in Low Angular Resolution Data: A Pediatric Study and Literature Review.
Description: Toselli, Benedetta, et al. Improvement in White Matter Tract Reconstruction with Constrained Spherical Deconvolution and Track Density Mapping in Low Angular Resolution Data: A Pediatric Study and Literature Review. ''Front Pediatr''. 2017; '''5''': 182
Updated: Sep 21, 2019
Multimodal Imaging in a Patient with Hemidystonia Responsive to GPi Deep Brain Stimulation.
Description: Sidiropoulos, Christos, et al. Multimodal Imaging in a Patient with Hemidystonia Responsive to GPi Deep Brain Stimulation. ''Case Rep Neurol Med''. 2017; '''2017''': 9653520
Updated: Sep 21, 2019
The Olfactory System Revealed: Non-Invasive Mapping by using Constrained Spherical Deconvolution Tractography in Healthy Humans.
Description: Milardi, Demetrio, et al. The Olfactory System Revealed: Non-Invasive Mapping by using Constrained Spherical Deconvolution Tractography in Healthy Humans. ''Front Neuroanat''. 2017; '''11''': 32
Updated: Sep 21, 2019
White matter integrity of the medial forebrain bundle and attention and working memory deficits following traumatic brain injury.
Description: Owens, Jacqueline A, et al. White matter integrity of the medial forebrain bundle and attention and working memory deficits following traumatic brain injury. ''Brain Behav''. 2017 Feb; '''7''' (2):e00608
Updated: Sep 21, 2019
Microstructural visual system changes in AQP4-antibody-seropositive NMOSD.
Description: Oertel, Frederike C, et al. Microstructural visual system changes in AQP4-antibody-seropositive NMOSD. ''Neurol Neuroimmunol Neuroinflamm''. 2017 May; '''4''' (3):e334
Updated: Sep 21, 2019
Alterations in prefrontal connectivity in schizophrenia assessed using diffusion magnetic resonance imaging.
Description: Molina, Vicente, et al. Alterations in prefrontal connectivity in schizophrenia assessed using diffusion magnetic resonance imaging. ''Prog Neuropsychopharmacol Biol Psychiatry''. 2017 Jun 2; '''76''': 107-115
Updated: Sep 21, 2019
PREDICT-CP: study protocol of implementation of comprehensive surveillance to predict outcomes for school-aged children with cerebral palsy.
Description: Boyd, Roslyn N, et al. PREDICT-CP: study protocol of implementation of comprehensive surveillance to predict outcomes for school-aged children with cerebral palsy. ''BMJ Open''. 2017 Jul 12; '''7''' (7):e014950
Updated: Sep 21, 2019
Relationships between the integrity and function of lumbar nerve roots as assessed by diffusion tensor imaging and neurophysiology.
Description: Chiou, S Y, et al. Relationships between the integrity and function of lumbar nerve roots as assessed by diffusion tensor imaging and neurophysiology. ''Neuroradiology''. 2017 Sep; '''59''' (9):893-903
Updated: Sep 21, 2019
Improvement of olfactory function after sinus surgery correlates with white matter properties measured by diffusion tensor imaging.
Description: Gullmar, Daniel, et al. Improvement of olfactory function after sinus surgery correlates with white matter properties measured by diffusion tensor imaging. ''Neuroscience''. 2017 Sep 30; '''360''': 190-196
Updated: Sep 21, 2019
Contralateral cortico-ponto-cerebellar pathways reconstruction in humans in vivo: implications for reciprocal cerebro-cerebellar structural connectivity in motor and non-motor areas.
Description: Palesi, Fulvia, et al. Contralateral cortico-ponto-cerebellar pathways reconstruction in humans in vivo: implications for reciprocal cerebro-cerebellar structural connectivity in motor and non-motor areas. ''Sci Rep''. 2017 Oct 9; '''7''' (1):12841
Updated: Sep 21, 2019
Identification of a Neurocognitive Mechanism Underpinning Awareness of Chronic Tinnitus.
Description: Trevis, Krysta J, et al. Identification of a Neurocognitive Mechanism Underpinning Awareness of Chronic Tinnitus. ''Sci Rep''. 2017 Nov 9; '''7''' (1):15220
Updated: Sep 21, 2019
Autosomal dominant cerebellar ataxias: Imaging biomarkers with high effect sizes.
Description: Adanyeguh, Isaac M, et al. Autosomal dominant cerebellar ataxias: Imaging biomarkers with high effect sizes. ''Neuroimage Clin''. 2018; '''19''': 858-867
Updated: Sep 21, 2019
Connectome analysis with diffusion MRI in idiopathic Parkinson's disease: Evaluation using multi-shell, multi-tissue, constrained spherical deconvolution.
Description: Kamagata, Koji, et al. Connectome analysis with diffusion MRI in idiopathic Parkinson's disease: Evaluation using multi-shell, multi-tissue, constrained spherical deconvolution. ''Neuroimage Clin''. 2018; '''17''': 518-529
Updated: Sep 21, 2019
Deficits of entropy modulation in schizophrenia are predicted by functional connectivity strength in the theta band and structural clustering.
Description: Gomez-Pilar, Javier, et al. Deficits of entropy modulation in schizophrenia are predicted by functional connectivity strength in the theta band and structural clustering. ''Neuroimage Clin''. 2018; '''18''': 382-389
Updated: Sep 21, 2019
Injuries to the Immature Optic Radiation Show Correlated Thinning of the Macular Ganglion Cell Layer.
Description: Lennartsson, Finn, et al. Injuries to the Immature Optic Radiation Show Correlated Thinning of the Macular Ganglion Cell Layer. ''Front Neurol''. 2018; '''9''': 321
Updated: Sep 21, 2019
Age is reflected in the Fractal Dimensionality of MRI Diffusion Based Tractography.
Description: Reishofer, Gernot, et al. Age is reflected in the Fractal Dimensionality of MRI Diffusion Based Tractography. ''Sci Rep''. 2018 Apr 3; '''8''' (1):5431
Updated: Sep 21, 2019
Minimum spanning tree analysis of the human connectome.
Description: van Dellen, Edwin, et al. Minimum spanning tree analysis of the human connectome. ''Hum Brain Mapp''. 2018 Jun; '''39''' (6):2455-2471
Updated: Sep 21, 2019
Subcortical structural connectivity of insular subregions.
Description: Ghaziri, Jimmy, et al. Subcortical structural connectivity of insular subregions. ''Sci Rep''. 2018 Jun 5; '''8''' (1):8596
Updated: Sep 21, 2019
Role of Dimensionality in Predicting the Spontaneous Behavior of the Brain Using the Classical Ising Model and the Ising Model Implemented on a Structural Connectome.
Description: Abeyasinghe, Pubuditha M, et al. Role of Dimensionality in Predicting the Spontaneous Behavior of the Brain Using the Classical Ising Model and the Ising Model Implemented on a Structural Connectome. ''Brain Connect''. 2018 Sep 4;
Updated: Sep 21, 2019
Acute Subcortical Infarcts Cause Secondary Degeneration in the Remote Non-involved Cortex and Connecting Fiber Tracts.
Description: Wei, Xiao-Er, et al. Acute Subcortical Infarcts Cause Secondary Degeneration in the Remote Non-involved Cortex and Connecting Fiber Tracts. ''Front Neurol''. 2019; '''10''': 860
Updated: Sep 21, 2019
Corticobulbar Tract Injury, Oromotor Impairment and Language Plasticity in Adolescents Born Preterm.
Description: Northam, Gemma B, et al. Corticobulbar Tract Injury, Oromotor Impairment and Language Plasticity in Adolescents Born Preterm. ''Front Hum Neurosci''. 2019; '''13''': 45
Updated: Sep 21, 2019
Fiber visualization for preoperative glioma assessment: Tractography versus local connectivity mapping.
Description: Schult, Thomas, et al. Fiber visualization for preoperative glioma assessment: Tractography versus local connectivity mapping. ''PLoS One''. 2019; '''14''' (12):e0226153
Updated: Jan 11, 2020
Papez Circuit Observed by in vivo Human Brain With 7.0T MRI Super-Resolution Track Density Imaging and Track Tracing.
Description: Choi, Sang-Han, et al. Papez Circuit Observed by in vivo Human Brain With 7.0T MRI Super-Resolution Track Density Imaging and Track Tracing. ''Front Neuroanat''. 2019; '''13''': 17
Updated: Sep 21, 2019
Quantifying nerve decussation abnormalities in the optic chiasm.
Description: Puzniak, Robert J, et al. Quantifying nerve decussation abnormalities in the optic chiasm. ''Neuroimage Clin''. 2019; '''24''': 102055
Updated: Dec 21, 2019
Functionally defined white matter of the macaque monkey brain reveals a dorso-ventral attention network.
Description: Sani, Ilaria, et al. Functionally defined white matter of the macaque monkey brain reveals a dorso-ventral attention network. ''Elife''. 2019 Jan 2; '''8''':
Updated: Sep 21, 2019
An afferent white matter pathway from the pulvinar to the amygdala facilitates fear recognition.
Description: McFadyen, Jessica, et al. An afferent white matter pathway from the pulvinar to the amygdala facilitates fear recognition. ''Elife''. 2019 Jan 16; '''8''':
Updated: Sep 21, 2019
Hemispheric Regional Based Analysis of Diffusion Tensor Imaging and Diffusion Tensor Tractography in Patients with Temporal Lobe Epilepsy and Correlation with Patient outcomes.
Description: Alizadeh, Mahdi, et al. Hemispheric Regional Based Analysis of Diffusion Tensor Imaging and Diffusion Tensor Tractography in Patients with Temporal Lobe Epilepsy and Correlation with Patient outcomes. ''Sci Rep''. 2019 Jan 18; '''9''' (1):215
Updated: Sep 21, 2019
White matter alterations and tract lateralization in children with dyslexia and isolated spelling deficits.
Description: Banfi, Chiara, et al. White matter alterations and tract lateralization in children with dyslexia and isolated spelling deficits. ''Hum Brain Mapp''. 2019 Feb 15; '''40''' (3):765-776
Updated: Sep 21, 2019
Electric stimulation of the medial forebrain bundle influences sensorimotor gaiting in humans.
Description: Panther, Patricia, et al. Electric stimulation of the medial forebrain bundle influences sensorimotor gaiting in humans. ''BMC Neurosci''. 2019 Apr 29; '''20''' (1):20
Updated: Sep 21, 2019
Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms.
Description: Tax, Chantal Mw, et al. Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms. ''Neuroimage''. 2019 Jul 15; '''195''': 285-299
Updated: Sep 21, 2019
Modeling conduction delays in the corpus callosum using MRI-measured g-ratio.
Description: Berman, S, et al. Modeling conduction delays in the corpus callosum using MRI-measured g-ratio. ''Neuroimage''. 2019 Jul 15; '''195''': 128-139
Updated: Sep 21, 2019
Dopamine D2/D3 receptor abnormalities after traumatic brain injury and their relationship to post-traumatic depression.
Description: Jolly, Amy E, et al. Dopamine D2/D3 receptor abnormalities after traumatic brain injury and their relationship to post-traumatic depression. ''Neuroimage Clin''. 2019 Jul 22; '''24''': 101950
Updated: Sep 21, 2019
The cortico-rubral and cerebello-rubral pathways are topographically organized within the human red nucleus.
Description: Cacciola, Alberto, et al. The cortico-rubral and cerebello-rubral pathways are topographically organized within the human red nucleus. ''Sci Rep''. 2019 Aug 20; '''9''' (1):12117
Updated: Sep 21, 2019
Biopsy Confirmed Glioma Recurrence Predicted by Multi-Modal Neuroimaging Metrics.
Description: Costabile, Jamie D, et al. Biopsy Confirmed Glioma Recurrence Predicted by Multi-Modal Neuroimaging Metrics. ''J Clin Med''. 2019 Aug 23; '''8''' (9):
Updated: Nov 23, 2019
MR g-ratio-weighted connectome analysis in patients with multiple sclerosis.
Description: Kamagata, Koji, et al. MR g-ratio-weighted connectome analysis in patients with multiple sclerosis. ''Sci Rep''. 2019 Sep 18; '''9''' (1):13522
Updated: Oct 12, 2019
Minor gait impairment despite white matter damage in pure small vessel disease.
Description: Finsterwalder, Sofia, et al. Minor gait impairment despite white matter damage in pure small vessel disease. ''Ann Clin Transl Neurol''. 2019 Oct; '''6''' (10):2026-2036
Updated: Nov 23, 2019
Higher body mass index is linked to altered hypothalamic microstructure.
Description: Thomas, K, et al. Higher body mass index is linked to altered hypothalamic microstructure. ''Sci Rep''. 2019 Nov 22; '''9''' (1):17373
Updated: Jan 11, 2020