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MRtrix

NOTE: this is the legacy version of MRtrix, and is no longer supported or maintained. To use the latest official version of MRtrix, please visit https://www.mrtrix.org

MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.

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Specifications

Category:

Diffusion MR Fiber Tracking, Image Display

Diagnosis:

Ataxia, Brain Injuries, Alzheimer Disease, Epilepsy, Parkinson Disease, Schizophrenia, Stroke

Associations

is part of:

NeuroDebian

is installed on:

Neurodocker
NITRC Computational Environment (NITRC-CE)

is required to build:

Mapping population-based structural connectomes

works well with:

IIT Human Brain Atlas (v.5.0)
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
HFH_DTI_TLE_TOOLS
Surf Ice

Recent Activity - Documents

PubMed Mentions documentation

Data-driven method to infer the seizure propagation patterns in an epileptic brain from intracranial electroencephalography. posted by NITRC Moderator on Apr 10

PubMed Mentions documentation

Neural Underpinnings of Proactive Interference in Working Memory: Evidence From Patients With Unilateral Lesions. posted by NITRC Moderator on Apr 10

PubMed Mentions documentation

Homologous laminar organization of the mouse and human subiculum. posted by NITRC Moderator on Mar 20

PubMed Mentions documentation

Collegiate athlete brain data for white matter mapping and network neuroscience. posted by NITRC Moderator on Mar 20

PubMed Mentions documentation

Axon morphology is modulated by the local environment and impacts the noninvasive investigation of its structure-function relationship. posted by NITRC Moderator on Feb 13

PubMed Mentions documentation

The human endogenous attentional control network includes a ventro-temporal cortical node. posted by NITRC Moderator on Feb 13

PubMed Mentions documentation

Neural diffusivity and pre-emptive epileptic seizure intervention. posted by NITRC Moderator on Jan 23

PubMed Mentions documentation

Data-science ready, multisite, human diffusion MRI white-matter-tract statistics. posted by NITRC Moderator on Dec 26, 2020

PubMed Mentions documentation

Maternal cortisol is associated with neonatal amygdala microstructure and connectivity in a sexually dimorphic manner. posted by NITRC Moderator on Dec 26, 2020

PubMed Mentions documentation

Anatomical Characterization of the Human Structural Connectivity between the Pedunculopontine Nucleus and Globus Pallidus via Multi-Shell Multi-Tissue Tractography. posted by NITRC Moderator on Nov 14, 2020

Recent Activity - News

Tool & Resource news

MRtrix version 0.2.12 released posted by J-Donald Tournier on Mar 6, 2014

Tool & Resource news

MRtrix version 0.2.11 released posted by J-Donald Tournier on Mar 14, 2013

Tool & Resource news

MRtrix version 0.2.10 released posted by J-Donald Tournier on Feb 16, 2012

Tool & Resource news

MRtrix Version 0.2.8 released posted by J-Donald Tournier on Apr 14, 2010

Tool & Resource news

MRtrix Version 0.2.7 released posted by J-Donald Tournier on Aug 26, 2009

Tool & Resource news

MRtrix Version 0.2.6 released posted by J-Donald Tournier on Mar 19, 2009

Tool & Resource news

MRtrix Version 0.2.5 released posted by J-Donald Tournier on Sep 3, 2008

Tool & Resource news

Version 0.2.4 released posted by J-Donald Tournier on Aug 4, 2008

Tool & Resource news

How to get help posted by J-Donald Tournier on Jul 16, 2008

Recent Activity - Files

mrtrix: 0.2.13 release

mrtrix-0.2.13_2017-03-25.tar.bz2 posted by J-Donald Tournier on Mar 25, 2017

mrtrix: 0.2.12 release

mrtrix-0.2.12_2014-02-25.tar.bz2 posted by J-Donald Tournier on Feb 25, 2014

mrtrix-win32: 0.2.11 release

mrtrix-0.2.11-win32.exe posted by Ben Jeurissen on Mar 13, 2013

mrtrix: 0.2.11 release

mrtrix-0.2.11_2013-03-13.tar.bz2 posted by J-Donald Tournier on Mar 13, 2013

mrtrix-win32: 0.2.10 release

mrtrix-0.2.10-win32.exe posted by Ben Jeurissen on Feb 13, 2012

mrtrix: 0.2.10 release

mrtrix-0.2.10_2012-02-10.tar.bz2 posted by J-Donald Tournier on Feb 10, 2012

mrtrix-win32: 0.2.9 release

mrtrix-0.2.9-win32.exe posted by Ben Jeurissen on Aug 25, 2010

mrtrix: 0.2.9 release

mrtrix-0.2.9_2010-08-24.tar.bz2 posted by J-Donald Tournier on Aug 24, 2010

mrtrix-win32: 0.2.8 release

mrtrix-0.2.8-win32.exe posted by Ben Jeurissen on Apr 14, 2010

mrtrix: 0.2.8 release

mrtrix-0.2.8_2010-04-14.tar.bz2 posted by J-Donald Tournier on Apr 14, 2010