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MRtrix

NOTE: this is the legacy version of MRtrix, and is no longer supported or maintained. To use the latest official version of MRtrix, please visit https://www.mrtrix.org

MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.

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Specifications

Category:

Diffusion MR Fiber Tracking, Image Display

Diagnosis:

Ataxia, Brain Concussion, Brain Injuries, Alzheimer Disease, Epilepsy, Parkinson Disease, Schizophrenia, Stroke

Associations

is part of:

NeuroDebian

is installed on:

Neurodocker
NITRC Computational Environment (NITRC-CE)

is required to build:

Mapping population-based structural connectomes

works well with:

IIT Human Brain Atlas (v.5.0)
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
HFH_DTI_TLE_TOOLS
Surf Ice

Recent Activity - Documents

PubMed Mentions documentation

Identifying spatio-temporal seizure propagation patterns in epilepsy using Bayesian inference. posted by NITRC Moderator on Dec 18, 2021

PubMed Mentions documentation

White matter degeneration revealed by fiber-specific analysis relates to recovery of hand function after stroke. posted by NITRC Moderator on Nov 13, 2021

PubMed Mentions documentation

Uncovering a 'sensitive window' of multisensory and motor neuroplasticity in the cerebrum and cerebellum of male and female starlings. posted by NITRC Moderator on Oct 16, 2021

PubMed Mentions documentation

Parkinson's disease: deep learning with a parameter-weighted structural connectome matrix for diagnosis and neural circuit disorder investigation. posted by NITRC Moderator on Oct 16, 2021

PubMed Mentions documentation

A detailed analysis of anatomical plausibility of crossed and uncrossed streamline rendition of the dentato-rubro-thalamic tract (DRT(T)) in a commercial stereotactic planning system. posted by NITRC Moderator on Oct 16, 2021

PubMed Mentions documentation

The benefit of the diffusion kurtosis imaging in presurgical evaluation in patients with focal MR-negative epilepsy. posted by NITRC Moderator on Oct 16, 2021

PubMed Mentions documentation

Neuroinflammation and Its Association with Cognition, Neuronal Markers and Peripheral Inflammation after Chemotherapy for Breast Cancer. posted by NITRC Moderator on Oct 16, 2021

PubMed Mentions documentation

Automatic Segmentation of the Dorsal Claustrum in Humans Using in vivo High-Resolution MRI. posted by NITRC Moderator on Aug 14, 2021

PubMed Mentions documentation

Case Report: An MRI Traumatic Brain Injury Longitudinal Case Study at 7 Tesla: Pre- and Post-injury Structural Network and Volumetric Reorganization and Recovery. posted by NITRC Moderator on Aug 14, 2021

PubMed Mentions documentation

Statistical and Machine Learning Link Selection Methods for Brain Functional Networks: Review and Comparison. posted by NITRC Moderator on Jul 10, 2021

Recent Activity - News

Tool & Resource news

MRtrix version 0.2.12 released posted by J-Donald Tournier on Mar 6, 2014

Tool & Resource news

MRtrix version 0.2.11 released posted by J-Donald Tournier on Mar 14, 2013

Tool & Resource news

MRtrix version 0.2.10 released posted by J-Donald Tournier on Feb 16, 2012

Tool & Resource news

MRtrix Version 0.2.8 released posted by J-Donald Tournier on Apr 14, 2010

Tool & Resource news

MRtrix Version 0.2.7 released posted by J-Donald Tournier on Aug 26, 2009

Tool & Resource news

MRtrix Version 0.2.6 released posted by J-Donald Tournier on Mar 19, 2009

Tool & Resource news

MRtrix Version 0.2.5 released posted by J-Donald Tournier on Sep 3, 2008

Tool & Resource news

Version 0.2.4 released posted by J-Donald Tournier on Aug 4, 2008

Tool & Resource news

How to get help posted by J-Donald Tournier on Jul 16, 2008

Recent Activity - Files

mrtrix: 0.2.13 release

mrtrix-0.2.13_2017-03-25.tar.bz2 posted by J-Donald Tournier on Mar 25, 2017

mrtrix: 0.2.12 release

mrtrix-0.2.12_2014-02-25.tar.bz2 posted by J-Donald Tournier on Feb 25, 2014

mrtrix-win32: 0.2.11 release

mrtrix-0.2.11-win32.exe posted by Ben Jeurissen on Mar 13, 2013

mrtrix: 0.2.11 release

mrtrix-0.2.11_2013-03-13.tar.bz2 posted by J-Donald Tournier on Mar 13, 2013

mrtrix-win32: 0.2.10 release

mrtrix-0.2.10-win32.exe posted by Ben Jeurissen on Feb 13, 2012

mrtrix: 0.2.10 release

mrtrix-0.2.10_2012-02-10.tar.bz2 posted by J-Donald Tournier on Feb 10, 2012

mrtrix-win32: 0.2.9 release

mrtrix-0.2.9-win32.exe posted by Ben Jeurissen on Aug 25, 2010

mrtrix: 0.2.9 release

mrtrix-0.2.9_2010-08-24.tar.bz2 posted by J-Donald Tournier on Aug 24, 2010

mrtrix-win32: 0.2.8 release

mrtrix-0.2.8-win32.exe posted by Ben Jeurissen on Apr 14, 2010

mrtrix: 0.2.8 release

mrtrix-0.2.8_2010-04-14.tar.bz2 posted by J-Donald Tournier on Apr 14, 2010