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MRtrix

MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.

Note: if you are looking for the latest unofficial version of MRtrix, MRtrix3, please visit this site: https://github.com/MRtrix3/mrtrix3

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Specifications

Category:

Diffusion MR Fiber Tracking, Image Display

License:

GNU General Public License (GPL)

Development Status:

5 - Production/Stable/Mature

Diagnosis:

Ataxia, Brain Injuries, Alzheimer Disease, Epilepsy, Hydrocephalus, Multiple Sclerosis, Parkinson Disease, Schizophrenia, Stroke

Domain:

MR

Environment:

X11 Applications

Intended Audience:

Developers, End Users

Natural Language:

English

Operating System:

Linux

Programming Language:

C++

Supported Data Format:

ANALYZE, bshort/bfloat, DICOM, NIfTI-1, Other Format

Associations

is part of:

NeuroDebian

is installed on:

Neurodocker
NITRC Computational Environment (NITRC-CE)

is required to build:

Mapping population-based structural connectomes

works well with:

IIT Human Brain Atlas (v.5.0)
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
HFH_DTI_TLE_TOOLS
Surf Ice

Recent Activity - Documents

PubMed Mentions documentation

Higher body mass index is linked to altered hypothalamic microstructure. posted by NITRC Moderator on Jan 11

PubMed Mentions documentation

Fiber visualization for preoperative glioma assessment: Tractography versus local connectivity mapping. posted by NITRC Moderator on Jan 11

PubMed Mentions documentation

Quantifying nerve decussation abnormalities in the optic chiasm. posted by NITRC Moderator on Dec 21, 2019

PubMed Mentions documentation

Minor gait impairment despite white matter damage in pure small vessel disease. posted by NITRC Moderator on Nov 23, 2019

PubMed Mentions documentation

Biopsy Confirmed Glioma Recurrence Predicted by Multi-Modal Neuroimaging Metrics. posted by NITRC Moderator on Nov 23, 2019

PubMed Mentions documentation

k-space and q-space: combining ultra-high spatial and angular resolution in diffusion imaging using ZOOPPA at 7 T. posted by NITRC Moderator on Oct 12, 2019

PubMed Mentions documentation

Orientation dependence of magnetization transfer parameters in human white matter. posted by NITRC Moderator on Oct 12, 2019

PubMed Mentions documentation

MR g-ratio-weighted connectome analysis in patients with multiple sclerosis. posted by NITRC Moderator on Oct 12, 2019

PubMed Mentions documentation

Layer-specific intracortical connectivity revealed with diffusion MRI. posted by NITRC Moderator on Sep 21, 2019

PubMed Mentions documentation

The connectome mapper: an open-source processing pipeline to map connectomes with MRI. posted by NITRC Moderator on Sep 21, 2019

Recent Activity - News

Tool & Resource news

MRtrix version 0.2.12 released posted by J-Donald Tournier on Mar 6, 2014

Tool & Resource news

MRtrix version 0.2.11 released posted by J-Donald Tournier on Mar 14, 2013

Tool & Resource news

MRtrix version 0.2.10 released posted by J-Donald Tournier on Feb 16, 2012

Tool & Resource news

MRtrix Version 0.2.8 released posted by J-Donald Tournier on Apr 13, 2010

Tool & Resource news

MRtrix Version 0.2.7 released posted by J-Donald Tournier on Aug 25, 2009

Tool & Resource news

MRtrix Version 0.2.6 released posted by J-Donald Tournier on Mar 18, 2009

Tool & Resource news

MRtrix Version 0.2.5 released posted by J-Donald Tournier on Sep 3, 2008

Tool & Resource news

Version 0.2.4 released posted by J-Donald Tournier on Aug 3, 2008

Tool & Resource news

How to get help posted by J-Donald Tournier on Jul 15, 2008

Recent Activity - Files

mrtrix: 0.2.13 release

mrtrix-0.2.13_2017-03-25.tar.bz2 posted by J-Donald Tournier on Mar 25, 2017

mrtrix: 0.2.12 release

mrtrix-0.2.12_2014-02-25.tar.bz2 posted by J-Donald Tournier on Feb 25, 2014

mrtrix-win32: 0.2.11 release

mrtrix-0.2.11-win32.exe posted by Ben Jeurissen on Mar 13, 2013

mrtrix: 0.2.11 release

mrtrix-0.2.11_2013-03-13.tar.bz2 posted by J-Donald Tournier on Mar 12, 2013

mrtrix-win32: 0.2.10 release

mrtrix-0.2.10-win32.exe posted by Ben Jeurissen on Feb 13, 2012

mrtrix: 0.2.10 release

mrtrix-0.2.10_2012-02-10.tar.bz2 posted by J-Donald Tournier on Feb 9, 2012

mrtrix-win32: 0.2.9 release

mrtrix-0.2.9-win32.exe posted by Ben Jeurissen on Aug 25, 2010

mrtrix: 0.2.9 release

mrtrix-0.2.9_2010-08-24.tar.bz2 posted by J-Donald Tournier on Aug 23, 2010

mrtrix-win32: 0.2.8 release

mrtrix-0.2.8-win32.exe posted by Ben Jeurissen on Apr 14, 2010

mrtrix: 0.2.8 release

mrtrix-0.2.8_2010-04-14.tar.bz2 posted by J-Donald Tournier on Apr 13, 2010