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MRtrix

NOTE: this is the legacy version of MRtrix, and is no longer supported or maintained. To use the latest official version of MRtrix, please visit https://www.mrtrix.org

MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.

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Specifications

Category:

Diffusion MR Fiber Tracking, Image Display

Diagnosis:

Ataxia, Brain Concussion, Brain Injuries, Alzheimer Disease, Epilepsy, Parkinson Disease, Schizophrenia, Stroke

Associations

is part of:

NeuroDebian

is installed on:

Neurodocker
NITRC Computational Environment (NITRC-CE)

is required to build:

Mapping population-based structural connectomes

works well with:

IIT Human Brain Atlas (v.5.0)
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
HFH_DTI_TLE_TOOLS
Surf Ice

Recent Activity - Documents

PubMed Mentions documentation

Automatic Segmentation of the Dorsal Claustrum in Humans Using in vivo High-Resolution MRI. posted by NITRC Moderator on Aug 14

PubMed Mentions documentation

Case Report: An MRI Traumatic Brain Injury Longitudinal Case Study at 7 Tesla: Pre- and Post-injury Structural Network and Volumetric Reorganization and Recovery. posted by NITRC Moderator on Aug 14

PubMed Mentions documentation

Statistical and Machine Learning Link Selection Methods for Brain Functional Networks: Review and Comparison. posted by NITRC Moderator on Jul 10

PubMed Mentions documentation

White matter tracts related to memory and emotion in very preterm children. posted by NITRC Moderator on Jun 19

PubMed Mentions documentation

Predicting outcome following mild traumatic brain injury: protocol for the longitudinal, prospective, observational Concussion Recovery (CREST) cohort study. posted by NITRC Moderator on Jun 19

PubMed Mentions documentation

Neural substrates of neuropsychological profiles in dystrophynopathies: A pilot study of diffusion tractography imaging. posted by NITRC Moderator on Jun 19

PubMed Mentions documentation

Fixel-Based Analysis of White Matter Degeneration in Patients With Progressive Supranuclear Palsy or Multiple System Atrophy, as Compared to Parkinson's Disease. posted by NITRC Moderator on May 15

PubMed Mentions documentation

Data-driven method to infer the seizure propagation patterns in an epileptic brain from intracranial electroencephalography. posted by NITRC Moderator on Apr 10

PubMed Mentions documentation

Neural Underpinnings of Proactive Interference in Working Memory: Evidence From Patients With Unilateral Lesions. posted by NITRC Moderator on Apr 10

PubMed Mentions documentation

Homologous laminar organization of the mouse and human subiculum. posted by NITRC Moderator on Mar 20

Recent Activity - News

Tool & Resource news

MRtrix version 0.2.12 released posted by J-Donald Tournier on Mar 6, 2014

Tool & Resource news

MRtrix version 0.2.11 released posted by J-Donald Tournier on Mar 14, 2013

Tool & Resource news

MRtrix version 0.2.10 released posted by J-Donald Tournier on Feb 16, 2012

Tool & Resource news

MRtrix Version 0.2.8 released posted by J-Donald Tournier on Apr 14, 2010

Tool & Resource news

MRtrix Version 0.2.7 released posted by J-Donald Tournier on Aug 26, 2009

Tool & Resource news

MRtrix Version 0.2.6 released posted by J-Donald Tournier on Mar 19, 2009

Tool & Resource news

MRtrix Version 0.2.5 released posted by J-Donald Tournier on Sep 3, 2008

Tool & Resource news

Version 0.2.4 released posted by J-Donald Tournier on Aug 4, 2008

Tool & Resource news

How to get help posted by J-Donald Tournier on Jul 16, 2008

Recent Activity - Files

mrtrix: 0.2.13 release

mrtrix-0.2.13_2017-03-25.tar.bz2 posted by J-Donald Tournier on Mar 25, 2017

mrtrix: 0.2.12 release

mrtrix-0.2.12_2014-02-25.tar.bz2 posted by J-Donald Tournier on Feb 25, 2014

mrtrix-win32: 0.2.11 release

mrtrix-0.2.11-win32.exe posted by Ben Jeurissen on Mar 13, 2013

mrtrix: 0.2.11 release

mrtrix-0.2.11_2013-03-13.tar.bz2 posted by J-Donald Tournier on Mar 13, 2013

mrtrix-win32: 0.2.10 release

mrtrix-0.2.10-win32.exe posted by Ben Jeurissen on Feb 13, 2012

mrtrix: 0.2.10 release

mrtrix-0.2.10_2012-02-10.tar.bz2 posted by J-Donald Tournier on Feb 10, 2012

mrtrix-win32: 0.2.9 release

mrtrix-0.2.9-win32.exe posted by Ben Jeurissen on Aug 25, 2010

mrtrix: 0.2.9 release

mrtrix-0.2.9_2010-08-24.tar.bz2 posted by J-Donald Tournier on Aug 24, 2010

mrtrix-win32: 0.2.8 release

mrtrix-0.2.8-win32.exe posted by Ben Jeurissen on Apr 14, 2010

mrtrix: 0.2.8 release

mrtrix-0.2.8_2010-04-14.tar.bz2 posted by J-Donald Tournier on Apr 14, 2010