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MRtrix

MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.

Note: if you are looking for the latest unofficial version of MRtrix, MRtrix3, please visit this site: https://github.com/MRtrix3/mrtrix3

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Specifications

Category:

Diffusion MR Fiber Tracking, Image Display

License:

GNU General Public License (GPL)

Development Status:

5 - Production/Stable/Mature

Diagnosis:

Brain Injuries, Epilepsy, Parkinson Disease, Stroke

Domain:

MR

Environment:

X11 Applications

Intended Audience:

Developers, End Users

Natural Language:

English

Operating System:

Linux

Programming Language:

C++

Supported Data Format:

ANALYZE, bshort/bfloat, DICOM, NIfTI-1, Other Format

Associations

is part of:

NeuroDebian

is installed on:

Neurodocker
NITRC Computational Environment (NITRC-CE)

is required to build:

Mapping population-based structural connectomes

works well with:

IIT Human Brain Atlas (v.4.1)
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
HFH_DTI_TLE_TOOLS
Surf Ice

Recent Activity - Documents

PubMed Mentions documentation

INCITE: A randomised trial comparing constraint induced movement therapy and bimanual training in children with congenital hemiplegia. posted by Nina Preuss on Dec 16, 2017

PubMed Mentions documentation

DFBIdb: a software package for neuroimaging data management. posted by Nina Preuss on Dec 16, 2017

PubMed Mentions documentation

Corticospinal tract integrity and motor function following neonatal stroke: a case study. posted by Nina Preuss on Dec 16, 2017

PubMed Mentions documentation

Tract specific reproducibility of tractography based morphology and diffusion metrics. posted by Nina Preuss on Dec 16, 2017

PubMed Mentions documentation

Maturation of corpus callosum anterior midbody is associated with neonatal motor function in eight preterm-born infants. posted by Nina Preuss on Dec 16, 2017

PubMed Mentions documentation

Pediatric traumatic brain injury: language outcomes and their relationship to the arcuate fasciculus. posted by Nina Preuss on Dec 16, 2017

PubMed Mentions documentation

Move it to improve it (Mitii): study protocol of a randomised controlled trial of a novel web-based multimodal training program for children and adolescents with cerebral palsy. posted by Nina Preuss on Dec 16, 2017

PubMed Mentions documentation

COMBIT: protocol of a randomised comparison trial of COMbined modified constraint induced movement therapy and bimanual intensive training with distributed model of standard upper limb rehabilitation in children with congenital hemiplegia. posted by Nina Preuss on Dec 16, 2017

PubMed Mentions documentation

Using in vivo probabilistic tractography to reveal two segregated dorsal 'language-cognitive' pathways in the human brain. posted by Nina Preuss on Dec 16, 2017

PubMed Mentions documentation

Altered white matter architecture in BDNF met carriers. posted by Nina Preuss on Dec 16, 2017

Recent Activity - News

Tool & Resource news

MRtrix version 0.2.12 released posted by J-Donald Tournier on Mar 6, 2014

Tool & Resource news

MRtrix version 0.2.11 released posted by J-Donald Tournier on Mar 14, 2013

Tool & Resource news

MRtrix version 0.2.10 released posted by J-Donald Tournier on Feb 16, 2012

Tool & Resource news

MRtrix Version 0.2.8 released posted by J-Donald Tournier on Apr 13, 2010

Tool & Resource news

MRtrix Version 0.2.7 released posted by J-Donald Tournier on Aug 25, 2009

Tool & Resource news

MRtrix Version 0.2.6 released posted by J-Donald Tournier on Mar 18, 2009

Tool & Resource news

MRtrix Version 0.2.5 released posted by J-Donald Tournier on Sep 3, 2008

Tool & Resource news

Version 0.2.4 released posted by J-Donald Tournier on Aug 3, 2008

Tool & Resource news

How to get help posted by J-Donald Tournier on Jul 15, 2008

Recent Activity - Files

mrtrix: 0.2.13 release

mrtrix-0.2.13_2017-03-25.tar.bz2 posted by J-Donald Tournier on Mar 25, 2017

mrtrix: 0.2.12 release

mrtrix-0.2.12_2014-02-25.tar.bz2 posted by J-Donald Tournier on Feb 25, 2014

mrtrix-win32: 0.2.11 release

mrtrix-0.2.11-win32.exe posted by Ben Jeurissen on Mar 13, 2013

mrtrix: 0.2.11 release

mrtrix-0.2.11_2013-03-13.tar.bz2 posted by J-Donald Tournier on Mar 12, 2013

mrtrix-win32: 0.2.10 release

mrtrix-0.2.10-win32.exe posted by Ben Jeurissen on Feb 13, 2012

mrtrix: 0.2.10 release

mrtrix-0.2.10_2012-02-10.tar.bz2 posted by J-Donald Tournier on Feb 9, 2012

mrtrix-win32: 0.2.9 release

mrtrix-0.2.9-win32.exe posted by Ben Jeurissen on Aug 25, 2010

mrtrix: 0.2.9 release

mrtrix-0.2.9_2010-08-24.tar.bz2 posted by J-Donald Tournier on Aug 23, 2010

mrtrix-win32: 0.2.8 release

mrtrix-0.2.8-win32.exe posted by Ben Jeurissen on Apr 14, 2010

mrtrix: 0.2.8 release

mrtrix-0.2.8_2010-04-14.tar.bz2 posted by J-Donald Tournier on Apr 13, 2010