I have results from SPM8 (thresholded SPM results). I'm try to visualized hdr/img files using BrainNet viewer. But, It doesn't work well. (very slow, lot of error massage, VISUALIZED ONLY VOLUME FILE(NO SURFACE))

Should I use BrainNet_spm functions?

Please give me some help for visualizing SPM8 result (just volume, I don't need node, edge information)

best,

Hi,

Please first load a surface file (you need a surface to map the volume) and the SPM volume file (e.g., spmT_0001.img), then, set the colormap range in the volume panel. 

If there are error massages, please send us for analyzing. 

Best,
Mingrui

I have the same problem. I have tried all the volume templates that come with BrainNet Viewer but when I load my .hdr file it 'freezes'. Matlab says 'busy' for hours. When I Ctr+C out of it, I get different things every time, like the following:

Operation terminated by user during num2str>convertUsingRecycledSprintf (line 200)

In num2str>handleNumericPrecision (line 181)
s = convertUsingRecycledSprintf(x, precision);
In num2str (line 84)
[s, forceWidth, f] = handleNumericPrecision(x, d);
In BrainNet_Option>Initialization (line 787)
textcell{i} = ['ROI ',num2str(EC.vol.roi.drawt(i))];
In BrainNet_Option>BrainNet_Option_OpeningFcn (line 79)
Initialization(handles);
In gui_mainfcn (line 221)
feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});
In BrainNet_Option (line 52)
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
In BrainNet>LoadFile_ClickedCallback (line 3223)
H=BrainNet_Option;
In gui_mainfcn (line 96)
feval(varargin{:});
In BrainNet (line 53)
gui_mainfcn(gui_State, varargin{:});
In @(hObject,eventdata)BrainNet('LoadFile_ClickedCallback',hObject,eventdata,guidata(hObject))
Interrupt while evaluating uipushtool ClickedCallback.

I have the same problem. I have tried all the volume templates that come with BrainNet Viewer but when I load my .hdr file it 'freezes'. Matlab says 'busy' for hours. When I Ctr+C out of it, I get different things every time, like the following:

Operation terminated by user during num2str>convertUsingRecycledSprintf (line 200)In num2str>handleNumericPrecision (line 181)        s = convertUsingRecycledSprintf(x, precision);In num2str (line 84)            [s, forceWidth, f] = handleNumericPrecision(x, d);In BrainNet_Option>Initialization (line 787)            textcell{i} = ['ROI ',num2str(EC.vol.roi.drawt(i))];In BrainNet_Option>BrainNet_Option_OpeningFcn (line 79)Initialization(handles);In gui_mainfcn (line 221)    feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});In BrainNet_Option (line 52)    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});In BrainNet>LoadFile_ClickedCallback (line 3223)    H=BrainNet_Option;In gui_mainfcn (line 96)        feval(varargin{:});In BrainNet (line 53)    gui_mainfcn(gui_State, varargin{:});In @(hObject,eventdata)BrainNet('LoadFile_ClickedCallback',hObject,eventdata,guidata(hObject)) Interrupt while evaluating uipushtool ClickedCallback.


Or:





Operation terminated by user during int2str (after line 32)In num2str (line 68)                s = int2str(x); % Enhance the performanceIn BrainNet_Option>Initialization (line 787)            textcell{i} = ['ROI ',num2str(EC.vol.roi.drawt(i))];In BrainNet_Option>BrainNet_Option_OpeningFcn (line 79)Initialization(handles);In gui_mainfcn (line 221)    feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});In BrainNet_Option (line 52)    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});In BrainNet>LoadFile_ClickedCallback (line 3223)    H=BrainNet_Option;In gui_mainfcn (line 96)        feval(varargin{:});In BrainNet (line 53)    gui_mainfcn(gui_State, varargin{:});In @(hObject,eventdata)BrainNet('LoadFile_ClickedCallback',hObject,eventdata,guidata(hObject)) Interrupt while evaluating uipushtool ClickedCallback.

Hi,

Could you please send us the hdr/img files? We shall have a test.

Many thanks.

Mingrui

Emailed it to you.

Hi, 

This issue occurs because BNV is identifying possible ROIs for ROI drawing when the option panel is initializing.  If the volume contains too many unique values (e.g. statistical maps), this would cause a long time to finish, especially when the image resolution is 1 mm. 

Could you please try the attached modified version? I have moved the ROI identifying procedure to the time when ROI drawing is enabled. 

Best,
Mingrui

Awesome, that seems to work!

Thanks so much,

Hugo