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help > RE: MCALT in AFNI
Apr 10, 2019 04:04 PM | Christopher Schwarz - Mayo Clinic
RE: MCALT in AFNI
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Originally posted by Kamil Grajski:
I don't have a lot of experience with AFNI, but for the direct question of how to get a skull-stripped version, then I agree with your suggestion. You can either use MCALT_brainmask to to exclude voxels that are mostly CSF, or MCALT_TIV to include the original signal for voxels that are mostly CSF and within the TIV.
Best,
Chris
Originally posted by Kamil Grajski:
Or...to answer my own question, is the template
obtained by applying the brain mask (./MCALT_brainmask.nii) to
./MCALT_T1.nii?
I don't have a lot of experience with AFNI, but for the direct question of how to get a skull-stripped version, then I agree with your suggestion. You can either use MCALT_brainmask to to exclude voxels that are mostly CSF, or MCALT_TIV to include the original signal for voxels that are mostly CSF and within the TIV.
Best,
Chris
Threaded View
| Title | Author | Date |
|---|---|---|
| Kamil Grajski | Apr 10, 2019 | |
| Kamil Grajski | Apr 10, 2019 | |
| Christopher Schwarz | Apr 10, 2019 | |
| Kamil Grajski | Apr 10, 2019 | |