Hi Dana,

Can you try running the command that’s failing manually?

You need to change to your CMTKreg folder.

Then eg

C:\Users\danah\CMTKregistration\CMTK\bin\registration -i -v --dofs 6 --dofs 9 --accuracy 0.4 -o Registration\affine\template_TLF_01_9dof.list template/template.nrrd images/

And see what happens. I’m not sure about the mix of forwards and backwards slashes.

Best,

Greg.