Hi Dana,

When you do that test run from what I can see it’s reading in the two input images and then failing. Do you know if it’s failing immediately or is it spending some time doing some computation first? Does it really print nothing else to the screen?

Can you

1.send the screen output of the whole test run
2. Try the test run but swap the orientation of the slashes in the output location (see below)
3. Give a full recursive listing of the CMTKreg folder with

ls -lR

(or whatever the equivalent is in your shell eg dir rather than ls) so that we can see the permissions on all the folders
4. Tell us more about what (windows) platform you’re running on and how you installed cmtk.
5. If the above does not clarify can you put a complete zipped sample directory with the template and one input in the images folder and the commands folder and your output Registration folder after running the test online somewhere (you can share privately with me if you prefer)

Some possible sample hypotheses about what is happening

0. I don’t know what windows/shell etc flavour you are using but it doesn’t like the backslashes in the output path for your .list folder
1. The second image file is corrupt part way through
2. You have an unusual write permissions error on your folder
3. Your cmtk installation is partly corrupt eg there is a missing library but other parts still work

All the best,

Greg.


> C:\Users\danah\CMTKregistration\CMTK\bin\registration -i -v --dofs 6 --dofs 9 --accuracy 0.4 -o Registration/affine/template_TLF_01_9dof.list template/template.nrrd images/TLF_01.nrrd