open-discussion > RE: Imaging Genomics Tools and Resources
Jan 18, 2013  07:01 PM | Justin Kirby
RE: Imaging Genomics Tools and Resources
Hi Kayhan,

I'm glad to hear you had no trouble with the imaging.  I work on TCIA (the imaging site) and not directly with TCGA, but I do know some basics about it.  There are two different data sets in the TCGA Data Portal.  I'm pretty certain the public set contains everything most researchers would care about.  There is a small set of protected data though.  You may want to double check the search criteria you used on their site ( https://tcga-data.nci.nih.gov/tcga/dataA... ) and ensure you use the option to get data from the Public Access Tier (it's on the top right of the page).  This is probably why it's asking for a login. If you still have questions/trouble with that site I think you could try contacting them here: https://tcga-data.nci.nih.gov/tcga/tcgaC...

If you, or anyone else who happens to read this, is interested in joining the TCGA Glioma Phenotype Research Group that I mentioned just say so.  I can add you to our mailing list and the regular t-con invitation and will provide an introduction to the rest of the group.  If you want to use an email address other than what you provided in your NITRC profile or have other questions you prefer to ask outside the forum you can reach me at kirbyju @ mail dot nih dot gov.

Justin

Threaded View

TitleAuthorDate
Li Shen Jan 13, 2013
Derek Beaton Jan 14, 2013
Justin Kirby Jan 14, 2013
Kayhan Batmanghelich Jan 18, 2013
RE: Imaging Genomics Tools and Resources
Justin Kirby Jan 18, 2013
Li Shen Jan 14, 2013
Kayhan Batmanghelich Jan 14, 2013
NITRC Moderator Jan 14, 2013