BRAINSFit

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NOTE: All active development of BRAINSFit is now being stored in a Git repository at github.com. Please go to

https://github.com/BRAINSia/BRAINSTools

A program for registering images with with mutual information based metric. Several registration options are given for 3,6, 9,12,16 parameter (i.e. translate, rigid, scale, scale/skew, full affine) based constraints for the registration. The program uses the Slicer3 execution model framework to define the command line arguments and can be fully integrated with Slicer3 using the module discovery capabilities of Slicer3

Specifications

Category:

Intermodal, Intersubject, Affine Warp, Linear Warp

License:

BSD License

Development Status:

5 - Production/Stable/Mature

Diagnosis:

Brain Injuries, Parkinson Disease

Domain:

Environment:

Console (Text Based)

Intended Audience:

Developers, End Users, Other Audience

Natural Language:

English

Operating System:

MacOS, Windows, OS Independent, POSIX/UNIX-like

Programming Language:

C++

Supported Data Format:

ANALYZE, DICOM, NIfTI-1, Other Format

Associations

is part of:

BRAINSTools
BRAINSTools

is a plugin for:

3D Slicer

is required to run:

DTI Atlas Builder

Recent Activity - Documents

PubMed Mentions documentation

Factors influencing the reliability of a CT angiography-based deep learning method for infarct volume estimation. posted by NITRC Moderator on Mar 16

PubMed Mentions documentation

Neural processes of auditory perception in Heschl's gyrus for upcoming acoustic stimuli in humans. posted by NITRC Moderator on Apr 22, 2023

PubMed Mentions documentation

Voxel-based diktiometry: Combining convolutional neural networks with voxel-based analysis and its application in diffusion tensor imaging for Parkinson's disease. posted by NITRC Moderator on Nov 26, 2022

PubMed Mentions documentation

The rostro-caudal gradient in the prefrontal cortex and its modulation by subthalamic deep brain stimulation in Parkinson's disease. posted by NITRC Moderator on Feb 13, 2021

PubMed Mentions documentation

VOLT: a novel open-source pipeline for automatic segmentation of endolymphatic space in inner ear MRI. posted by NITRC Moderator on Jan 23, 2021

PubMed Mentions documentation

Management of Parkinson's disease patients after DBS by remote programming: preliminary application of single center during quarantine of 2019-nCoV. posted by NITRC Moderator on Nov 14, 2020

PubMed Mentions documentation

Evaluating hearing performance with cochlear implants within the same patient using daily randomization and imaging-based fitting - The ELEPHANT study. posted by NITRC Moderator on Jul 18, 2020

PubMed Mentions documentation

Measuring geometric accuracy in magnetic resonance imaging with 3D-printed phantom and nonrigid image registration. posted by NITRC Moderator on Jun 20, 2020

PubMed Mentions documentation

Electrophysiological properties and seizure networks in hypothalamic hamartoma. posted by NITRC Moderator on Jun 20, 2020

PubMed Mentions documentation

Systemic chemotherapy decreases brain glucose metabolism. posted by NITRC Moderator on Sep 21, 2019

Statistics more information

Home Page

RRID: SCR_002340

Funding: NIH/NINDS R01-NS050568 (BRAINS Morphology and Image Analysis / Magnotta (PI))
NIH U54 EB005149 (National Alliance for Medical Image Computing)
NIH/NINDS R01-NS40068 (Neurobiological Predictors of Huntington’s Disease / Paulsen (PI))

Documents: 1

PubMed Mentions: 15

Registered: Aug 30, 2007

Organization: University of Iowa

Center: SINAPSE