DTI Atlas Builder

This tool creates an Atlas image as an average of several DTI images that will be registered. The registration will be done in two steps :
- Affine Registration with BRAINSFit
- Non Linear Registration with GreedyAtlas
A final step will apply the transformations to the original DTI images so that the final average can be computed.

The main function writes a python script that will be executed to compute the Atlas.

By running DTIAtlasBuilder, you will need to fill in informations in a Graphical User Interface, and then compute the Atlas. You can also run the tool in command line (no GUI).
Using the GUI, you will be able to save or load a dataset file or a parameter file.

The tool needs these other tools to work, so be sure to have these installed on your computer:
- ImageMath
- ResampleDTIlogEuclidean
- CropDTI
- dtiprocess
- BRAINSFit
- GreedyAtlas
- dtiaverage
- DTI-Reg
- unu
- MriWatcher (requires glut library)

This package is also available as an extension of 3D Slicer (http://www.slicer.org)
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Specifications

Category:Application
License:Apache License 2.0
Development Status:5 - Production/Stable/Mature
Domain:MR
Environment:Console (Text Based), Win32 (MS Windows), X11 Applications
Intended Audience:End Users
Operating System:Linux
Other Keywords: atlas, average, builder, diffusion, dti, tensor

Associations

build requires:
works well with:

Recent Activity

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File Activity

DTIAtlasBuilder v1.3: DTIAtlasBuilder_v1.3.2_linux64_noQt release

DTIAtlasBuilder_v1.3.2_linux64_noQt.tar.gz posted by Francois Budin on Mar 5, 2014

File Activity

DTIAtlasBuilder v1.3: DTIAtlasBuilder_v1.3_linux64 release

DTIAtlasBuilder_v1.3_linux64.tar.gz posted by Adrien Kaiser on Jun 26, 2013

Document Activity

Main Folder documentation

Usage tutorial ppt posted by Adrien Kaiser on Jun 19, 2013

Document Activity

Main Folder documentation

Usage Tutorial posted by Adrien Kaiser on Jun 19, 2013

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DTIAtlasBuilder v1.2: DTIAtlasBuilder v1.2 release

DTIAtlasBuilder_v1.2_linux64.tar.gz posted by Adrien Kaiser on May 1, 2013