Release Name: 0.2.11
Notes:
Next release of MRtrix, with the following key enhancements:
- compressed NIfTI support (*.nii.gz)
- DICOM multi-frame support
- variable brush size in MRView ROI tool
- a few files to help set up MIME types and icons under Linux
(just run ./install_mime_types)
Other bug fixes:
- generate NIfTI images that won't crash FSLView (i.e. when 4th
dimension is zero)
- fix bug that resulted in NaNs in response function
- fix bug in handling of temporary files when no write permission
to current working directory
- streamtrack's -stop option now tracks bidirectionally as
expected
- various compilation fixes
- other minor bug fixes (see change log for details)
Note that the Python interpreter in the build script is now
explicitly invoked as 'python2', since on newer systems 'python'
defaults to Python version 3, which will only abort with unhelpful
error messages. If you get 'bad interpreter' error messages, either
edit the first line of the 'build' file to point to the correct
Python version 2 executable, or create a symbolic link to it called
'python2' somewhere in your path, e.g.:
# ln -s /usr/bin/python
/usr/bin/python2
Changes:
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r371 | jdtournier@gmail.com | 2013-03-13 13:51:11 +1100 (Wed, 13 Mar 2013) | 1 line
fix minor glitch that prevented max_num_attempts field from being
properly updated when using default in streamtrack
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r367 | jdtournier@gmail.com | 2013-02-15 16:16:47 +1100 (Fri, 15 Feb 2013) | 1 line
added a few files to help set up Desktop entries and icons under
Linux
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r366 | jdtournier@gmail.com | 2013-01-09 13:10:14 +1100 (Wed, 09 Jan 2013) | 1 line
change python interpreter to python2 to avoid issues on systems
where python3 is the default
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r365 | jdtournier@gmail.com | 2012-11-27 11:46:45 +1100 (Tue, 27 Nov 2012) | 1 line
a couple of minor changes to ease installation on MacOSX
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r364 | jdtournier@gmail.com | 2012-11-23 23:37:16 +1100 (Fri, 23 Nov 2012) | 1 line
modify SVN revision parsing section of build script to handle
non-english locales
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r363 | jdtournier@gmail.com | 2012-11-09 12:04:37 +1100 (Fri, 09 Nov 2012) | 1 line
fix minor bug when loading matrix files that don't have a newline
at the end of the last line
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r362 | jdtournier@gmail.com | 2012-11-06 16:25:01 +1100 (Tue, 06 Nov 2012) | 1 line
allow loading individual DICOM files, and check for scaling
consistency between DICOM frames
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r361 | jdtournier@gmail.com | 2012-10-18 10:47:29 +1100 (Thu, 18 Oct 2012) | 1 line
included check for volume of ROI, and check that current position
in within bounds before reading values
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r360 | jdtournier@gmail.com | 2012-10-03 16:10:54 +1000 (Wed, 03 Oct 2012) | 1 line
modified -stop option to allow both ends of the track to propagate
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r359 | jdtournier@gmail.com | 2012-10-02 16:01:34 +1000 (Tue, 02 Oct 2012) | 1 line
relegate 'invalid key in header' messages to debug level
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r358 | jdtournier@gmail.com | 2012-09-26 09:58:24 +1000 (Wed, 26 Sep 2012) | 1 line
added -minlength and -invert options to filter_tracks
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r357 | jdtournier@gmail.com | 2012-09-10 13:55:32 +1000 (Mon, 10 Sep 2012) | 1 line
minor bug fixes for DICOM multi-frame to handle Skyra data
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r356 | jdtournier@gmail.com | 2012-09-07 17:02:52 +1000 (Fri, 07 Sep 2012) | 1 line
overhaul of DICOM handling to support DICOM multi-frame format.
Should also fix a few other issues that people have been
experiencing
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r355 | jdtournier@gmail.com | 2012-09-07 17:01:48 +1000 (Fri, 07 Sep 2012) | 1 line
mrcat now concatenates DW schemes from each image if concatenation
is along axis >= 3 and valid DW schemes can be found for all
input images
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r354 | jdtournier@gmail.com | 2012-08-30 15:31:06 +1000 (Thu, 30 Aug 2012) | 1 line
minor bug fix to handle track files that are not properly
terminated with an [Inf,Inf,Inf] triplet
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r353 | jdtournier@gmail.com | 2012-08-28 10:23:31 +1000 (Tue, 28 Aug 2012) | 1 line
fix bug in DWI::gen_direction_matrix() due to floating-point
rounding error, causing argument of acos() to be outside range
(-1,1) and so produced NaN in rare cases
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r352 | jdtournier@gmail.com | 2012-08-22 16:56:05 +1000 (Wed, 22 Aug 2012) | 1 line
added support for reading Siemens private DICOM tags (0019,100C) &
(0019,100D) to retrieve DW information - needed for some Skyra data
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r351 | jdtournier@gmail.com | 2012-07-26 21:12:46 +1000 (Thu, 26 Jul 2012) | 1 line
remove -mwindows flag from Windows build config for GUI commands
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r350 | jdtournier@gmail.com | 2012-07-26 17:50:57 +1000 (Thu, 26 Jul 2012) | 1 line
added variable brush size to ROI tool
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r349 | jdtournier@gmail.com | 2012-07-26 14:03:37 +1000 (Thu, 26 Jul 2012) | 1 line
modification to build script to allow documentation generation on
Windows
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r348 | jdtournier@gmail.com | 2012-07-25 09:47:29 +1000 (Wed, 25 Jul 2012) | 1 line
a few fixes from Ben Jeurissen to get a clean build on Windows
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r347 | jdtournier@gmail.com | 2012-07-23 14:33:17 +1000 (Mon, 23 Jul 2012) | 1 line
changed author information for tracks2vtk
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r346 | jdtournier@gmail.com | 2012-07-23 12:03:33 +1000 (Mon, 23 Jul 2012) | 1 line
new fixup_ANTS_warp command to cleanup ANTS-generated warp images
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r345 | jdtournier@gmail.com | 2012-07-19 14:42:00 +1000 (Thu, 19 Jul 2012) | 1 line
changed file permissions for newly-created files to 0644 instead of
0755
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r344 | jdtournier@gmail.com | 2012-07-19 13:16:42 +1000 (Thu, 19 Jul 2012) | 1 line
fix bug in creation of temporary files that caused application to
hang when user does not have write permissions to the current
working directory
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r343 | jdtournier@gmail.com | 2012-07-12 12:48:18 +1000 (Thu, 12 Jul 2012) | 1 line
fixed odd bug in write_mrtrix.m script
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r342 | jdtournier@gmail.com | 2012-07-12 11:41:28 +1000 (Thu, 12 Jul 2012) | 1 line
small changes to remove warnings on newer versions of GCC, and
minor updates to windows build config file
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r341 | jdtournier@gmail.com | 2012-07-11 12:12:22 +1000 (Wed, 11 Jul 2012) | 1 line
minor changes to ease compilation under Windows
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r340 | jdtournier@gmail.com | 2012-07-02 11:30:40 +1000 (Mon, 02 Jul 2012) | 1 line
fix for mmap-related error messages on Windows - still requires
testing
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r339 | jdtournier@gmail.com | 2012-06-19 12:27:39 +1000 (Tue, 19 Jun 2012) | 1 line
fix bug in parse_ints() causing unpredictable behaviour due to
uninitialised value
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r338 | jdtournier@gmail.com | 2012-05-21 21:28:43 +1000 (Mon, 21 May 2012) | 1 line
fix minor bugs in disp_profile to handle very large SH
coefficients, and to remove a spurious warning when loading a
response function when the -response option has already been
specified
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r337 | jdtournier@gmail.com | 2012-05-09 07:26:22 +1000 (Wed, 09 May 2012) | 1 line
added option -total_count to compute fractional track maps with
respect to total number of tracts generated rather than number in
file
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r336 | jdtournier@gmail.com | 2012-05-03 17:19:45 +1000 (Thu, 03 May 2012) | 1 line
remove specific glib headers that aren't supposed to be directly
included, as this prevents compilation on newer versions of glib
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r335 | jdtournier@gmail.com | 2012-04-04 06:06:42 +1000 (Wed, 04 Apr 2012) | 1 line
patch from Chris Adamson to allow fslview to handle zero as the 4th
dimension in a 3D NIfTI file
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r334 | jdtournier@gmail.com | 2012-03-06 22:13:16 +1100 (Tue, 06 Mar 2012) | 1 line
fix build script to compile correctly on MacOSX with zlib
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r333 | jdtournier@gmail.com | 2012-03-05 21:22:29 +1100 (Mon, 05 Mar 2012) | 1 line
final updates for GZ support
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r332 | jdtournier@gmail.com | 2012-03-02 14:00:53 +1100 (Fri, 02 Mar 2012) | 1 line
minor cleanup
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r331 | jdtournier@gmail.com | 2012-03-02 13:58:00 +1100 (Fri, 02 Mar 2012) | 1 line
added support for GZ compressed NIfTI and MRtrix format images -
thanks to Chris Adamson for original patch
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