PESTICA & SLOMOCO: physio and motion correction tools
PESTICA detects the pulse and the breathing cycles _from the data itself_, equivalent to a parallel monitored pulse signal and a respiratory chest-bellows signal. One can use parallel monitored or PESTICA-monitored pulse and respiration for correction using the model-based corrections RETROICOR or IRF-RETROICOR.
The other half of PESTICA is an adaptive physiologic noise removal tool (Impulse Response Function or IRF-RETROICOR) that zooms in on noise with only 6 regressors, getting all the noise that 5th order RETROICOR gets (using 20 regressors). These tools will allow you to correct your data for physiologic noise with what you currently have.
Specifications
Recent Activity - Documents
Physiological noise in brainstem FMRI. posted by NITRC Moderator on Sep 28, 2019
Mining data from hemodynamic simulations via Bayesian emulation. posted by NITRC Moderator on Dec 17, 2017
Recent Activity - Forums
Lacking A TAXIS OFFSET posted by hmri on Nov 14, 2019
Multi-band acceleration factor posted by davidb on Aug 20, 2019
*.HEAD file missing in pestica_example posted by davidb on Jun 21, 2019
RE: a tip for matlab error in csh/tcsh envirn posted by davidb on Jun 19, 2019
Ubuntu Update causing errors posted by David Cunningham on Apr 3, 2019
a tip for background intensity correction after pestica posted by Hang Joon Jo on Feb 14, 2019
Error with textread posted by rachelnutt3012 on Apr 18, 2018
sharing a solution to fixing errors running slomoco posted by Yuqi Liu on Apr 12, 2018
"out of memory" issue running pestica4 posted by Yuqi Liu on Apr 7, 2018
Slice timing issue in PESTICA/SLOMOCO posted by Wanyong Shin on Oct 31, 2017
Recent Activity - News
New version of PESTICA/SLOMOCO is released posted by Wanyong Shin on Dec 13, 2019
slicewise motion correction SLOMOCO now released in PESTICA posted by Erik Beall on Jul 18, 2014
Physiologic Noise PESTICA tools released for AFNI users posted by Erik Beall on Apr 26, 2010
Recent Activity - Files
PESTICA&SLOMOCO: PESTICA/SLOMOCOv5.2 release
pestica_afni_v5.2.tar.gz posted by Wanyong Shin on Dec 4, 2019
PESTICA&SLOMOCO: PESTICA4(SLOMOCO) release
pestica4.zip posted by Wanyong Shin on Jun 30, 2016
SLOMOCO: SpinHistory simulation using SLOMOCO release
spinhist_slomoco.zip posted by Erik Beall on Jan 5, 2015
SLOMOCO: SLOMOCO_July2014 release
slomoco_afni_07_2014.zip posted by Erik Beall on Jul 16, 2014
pestica: pestica v2.0 (recommended) release
pestica_afni_v2.zip posted by Erik Beall on Feb 21, 2013
pestica: script fix for pestica v1.3 for AFNI users release
run_pestica_v1_3_fix.sh posted by Erik Beall on Nov 30, 2012
pestica: pestica v1.3 for AFNI users (recommended) release
pestica_afni_v1_3.zip posted by Erik Beall on Aug 8, 2012
pestica: pestica_afni v1.3 overview and tutorial release
pestica_tutorial_afni_v1_3.pdf posted by Erik Beall on Aug 8, 2012
pestica: pestica_afni v1.2 overview and tutorial release
pestica_tutorial_v2.pdf posted by Erik Beall on Jul 13, 2012