PubMed Mentions
The links below are to publications on PubMed referring to Insight Toolkit. This list is gathered weekly from PubMed automatically.
| Publication/References | |
| The roles of the "visual word form area" in reading. Description: Hillis, Argye E, et al. The roles of the "visual word form area" in reading. ''Neuroimage''. 2005 Jan 15; '''24''' (2):548-59 | |
| Virtual histology of transgenic mouse embryos for high-throughput phenotyping. Description: Johnson, John T, et al. Virtual histology of transgenic mouse embryos for high-throughput phenotyping. ''PLoS Genet''. 2006 Apr; '''2''' (4):e61 | |
| Brain MRI segmentation with multiphase minimal partitioning: a comparative study. Description: Angelini, Elsa D, et al. Brain MRI segmentation with multiphase minimal partitioning: a comparative study. ''Int J Biomed Imaging''. 2007; '''2007''': 10526 | |
| Image registration improves confidence and accuracy of image interpretation. Description: Erickson, Bradley J, et al. Image registration improves confidence and accuracy of image interpretation. ''Cancer Inform''. 2007; '''4''': 19-24 | |
| Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures. Description: Powell, Stephanie, et al. Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures. ''Neuroimage''. 2008 Jan 1; '''39''' (1):238-47 | |
| The Neuroterrain 3D Mouse Brain Atlas. Description: Bertrand, Louise, et al. The Neuroterrain 3D Mouse Brain Atlas. ''Front Neuroinform''. 2008; '''2''': 3 | |
| Structural consequences of diffuse traumatic brain injury: a large deformation tensor-based morphometry study. Description: Kim, Junghoon, et al. Structural consequences of diffuse traumatic brain injury: a large deformation tensor-based morphometry study. ''Neuroimage''. 2008 Feb 1; '''39''' (3):1014-26 | |
| Improving segmentation accuracy for magnetic resonance imaging using a boosted decision tree. Description: Chao, Wen-Hung, et al. Improving segmentation accuracy for magnetic resonance imaging using a boosted decision tree. ''J Neurosci Methods''. 2008 Nov 15; '''175''' (2):206-17 | |
| Subject-specific, multiscale simulation of electrophysiology: a software pipeline for image-based models and application examples. Description: MacLeod, R S, et al. Subject-specific, multiscale simulation of electrophysiology: a software pipeline for image-based models and application examples. ''Philos Trans A Math Phys Eng Sci''. 2009 Jun 13; '''367''' (1896):2293-310 | |
| Ion-abrasion scanning electron microscopy reveals surface-connected tubular conduits in HIV-infected macrophages. Description: Bennett, Adam E, et al. Ion-abrasion scanning electron microscopy reveals surface-connected tubular conduits in HIV-infected macrophages. ''PLoS Pathog''. 2009 Sep; '''5''' (9):e1000591 | |
| Open source bioimage informatics for cell biology. Description: Swedlow, Jason R, et al. Open source bioimage informatics for cell biology. ''Trends Cell Biol''. 2009 Nov; '''19''' (11):656-60 | |
| Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening. Description: Ljosa, Vebjorn, et al. Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening. ''PLoS Comput Biol''. 2009 Dec; '''5''' (12):e1000603 | |
| Development of an anatomically detailed MRI-derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function. Description: Bishop, Martin J, et al. Development of an anatomically detailed MRI-derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function. ''Am J Physiol Heart Circ Physiol''. 2010 Feb; '''298''' (2):H699-718 | |
| Evaluation of volume-based and surface-based brain image registration methods. Description: Klein, Arno, et al. Evaluation of volume-based and surface-based brain image registration methods. ''Neuroimage''. 2010 May 15; '''51''' (1):214-20 | |
| Changes in cross-sectional area of spinal canal and vertebral body under 2 years of teriparatide treatment: results from the EUROFORS study. Description: Schnell, R, et al. Changes in cross-sectional area of spinal canal and vertebral body under 2 years of teriparatide treatment: results from the EUROFORS study. ''Calcif Tissue Int''. 2010 Aug; '''87''' (2):130-6 | |
| Pattern recognition software and techniques for biological image analysis. Description: Shamir, Lior, et al. Pattern recognition software and techniques for biological image analysis. ''PLoS Comput Biol''. 2010 Nov 24; '''6''' (11):e1000974 | |
| Espina: a tool for the automated segmentation and counting of synapses in large stacks of electron microscopy images. Description: Morales, Juan, et al. Espina: a tool for the automated segmentation and counting of synapses in large stacks of electron microscopy images. ''Front Neuroanat''. 2011; '''5''': 18 | |
| Brain MAPS: an automated, accurate and robust brain extraction technique using a template library. Description: Leung, Kelvin K, et al. Brain MAPS: an automated, accurate and robust brain extraction technique using a template library. ''Neuroimage''. 2011 Apr 1; '''55''' (3):1091-108 | |
| Automated segmentation by pixel classification of retinal layers in ophthalmic OCT images. Description: Vermeer, K A, et al. Automated segmentation by pixel classification of retinal layers in ophthalmic OCT images. ''Biomed Opt Express''. 2011 Jun 1; '''2''' (6):1743-56 | |
| Decreased brain venous vasculature visibility on susceptibility-weighted imaging venography in patients with multiple sclerosis is related to chronic cerebrospinal venous insufficiency. Description: Zivadinov, Robert, et al. Decreased brain venous vasculature visibility on susceptibility-weighted imaging venography in patients with multiple sclerosis is related to chronic cerebrospinal venous insufficiency. ''BMC Neurol''. 2011 Oct 19; '''11''': 128 | |
| ACME: automated cell morphology extractor for comprehensive reconstruction of cell membranes. Description: Mosaliganti, Kishore R, et al. ACME: automated cell morphology extractor for comprehensive reconstruction of cell membranes. ''PLoS Comput Biol''. 2012; '''8''' (12):e1002780 | |
| Deformable image registration with inclusion of autodetected homologous tissue features. Description: Zhu, Qingsong, et al. Deformable image registration with inclusion of autodetected homologous tissue features. ''ScientificWorldJournal''. 2012; '''2012''': 913693 | |
| Semiautomated multimodal breast image registration. Description: Curtis, Charlotte, et al. Semiautomated multimodal breast image registration. ''Int J Biomed Imaging''. 2012; '''2012''': 890830 | |
| Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI. Description: Vigneron, Lara M, et al. Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI. ''Int J Biomed Imaging''. 2012; '''2012''': 872783 | |
| A protocol to extend the longitudinal coverage of on-board cone-beam CT. Description: Zheng, Dandan, et al. A protocol to extend the longitudinal coverage of on-board cone-beam CT. ''J Appl Clin Med Phys''. 2012 Jul 5; '''13''' (4):3796 | |
| 3D-FISH analysis of embryonic nuclei in mouse highlights several abrupt changes of nuclear organization during preimplantation development. Description: Aguirre-Lavin, Tiphaine, et al. 3D-FISH analysis of embryonic nuclei in mouse highlights several abrupt changes of nuclear organization during preimplantation development. ''BMC Dev Biol''. 2012 Oct 24; '''12''': 30 | |
| A Framework for Linear and Non-Linear Registration of Diffusion-Weighted MRIs Using Angular Interpolation. Description: Duarte-Carvajalino, Julio M, et al. A Framework for Linear and Non-Linear Registration of Diffusion-Weighted MRIs Using Angular Interpolation. ''Front Neurosci''. 2013; '''7''': 41 | |
| An objective method to optimize the MR sequence set for plaque classification in carotid vessel wall images using automated image segmentation. Description: van 't Klooster, Ronald, et al. An objective method to optimize the MR sequence set for plaque classification in carotid vessel wall images using automated image segmentation. ''PLoS One''. 2013; '''8''' (10):e78492 | |
| Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer's disease. Description: Shamonin, Denis P, et al. Fast parallel image registration on CPU and GPU for diagnostic classification of Alzheimer's disease. ''Front Neuroinform''. 2013; '''7''': 50 | |
| Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics. Description: Budin, Francois, et al. Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics. ''Front Neuroinform''. 2013; '''7''': 15 | |
| Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences. Description: Tustison, Nicholas J, et al. Instrumentation bias in the use and evaluation of scientific software: recommendations for reproducible practices in the computational sciences. ''Front Neurosci''. 2013; '''7''': 162 | |
| Registration of Magnetic Resonance Image Series for Knee Articular Cartilage Analysis: Data from the Osteoarthritis Initiative. Description: Urish, Kenneth L, et al. Registration of Magnetic Resonance Image Series for Knee Articular Cartilage Analysis: Data from the Osteoarthritis Initiative. ''Cartilage''. 2013 Jan; '''4''' (1):20-27 | |
| Atrophy of the left dorsolateral prefrontal cortex is associated with poor performance in verbal fluency in elderly poststroke women. Description: Chen, Yang-Kun, et al. Atrophy of the left dorsolateral prefrontal cortex is associated with poor performance in verbal fluency in elderly poststroke women. ''Neural Regen Res''. 2013 Feb 5; '''8''' (4):346-56 | |
| Chapter 17: bioimage informatics for systems pharmacology. Description: Li, Fuhai, et al. Chapter 17: bioimage informatics for systems pharmacology. ''PLoS Comput Biol''. 2013 Apr; '''9''' (4):e1003043 | |
| Light microscopy applications in systems biology: opportunities and challenges. Description: Antony, Paul Michel Aloyse, et al. Light microscopy applications in systems biology: opportunities and challenges. ''Cell Commun Signal''. 2013 Apr 11; '''11''' (1):24 | |
| Groupwise spatial normalization of fMRI data based on multi-range functional connectivity patterns. Description: Jiang, Di, et al. Groupwise spatial normalization of fMRI data based on multi-range functional connectivity patterns. ''Neuroimage''. 2013 Nov 15; '''82''': 355-72 | |
| Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks. Description: Stegmaier, Johannes, et al. Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks. ''PLoS One''. 2014; '''9''' (2):e90036 | |
| Fiber-driven resolution enhancement of diffusion-weighted images. Description: Yap, Pew-Thian, et al. Fiber-driven resolution enhancement of diffusion-weighted images. ''Neuroimage''. 2014 Jan 1; '''84''': 939-50 | |
| Population-based studies of myocardial hypertrophy: high resolution cardiovascular magnetic resonance atlases improve statistical power. Description: de Marvao, Antonio, et al. Population-based studies of myocardial hypertrophy: high resolution cardiovascular magnetic resonance atlases improve statistical power. ''J Cardiovasc Magn Reson''. 2014 Feb 3; '''16''': 16 | |
| BOOST: a supervised approach for multiple sclerosis lesion segmentation. Description: Cabezas, Mariano, et al. BOOST: a supervised approach for multiple sclerosis lesion segmentation. ''J Neurosci Methods''. 2014 Nov 30; '''237''': 108-17 | |
| Airway Segmentation and Centerline Extraction from Thoracic CT - Comparison of a New Method to State of the Art Commercialized Methods. Description: Reynisson, Pall Jens, et al. Airway Segmentation and Centerline Extraction from Thoracic CT - Comparison of a New Method to State of the Art Commercialized Methods. ''PLoS One''. 2015; '''10''' (12):e0144282 | |
| Improved Long-Term Imaging of Embryos with Genetically Encoded alpha-Bungarotoxin. Description: Swinburne, Ian A, et al. Improved Long-Term Imaging of Embryos with Genetically Encoded alpha-Bungarotoxin. ''PLoS One''. 2015; '''10''' (8):e0134005 | |
| In Vivo Detection of Perinatal Brain Metabolite Changes in a Rabbit Model of Intrauterine Growth Restriction (IUGR). Description: Simoes, Rui V, et al. In Vivo Detection of Perinatal Brain Metabolite Changes in a Rabbit Model of Intrauterine Growth Restriction (IUGR). ''PLoS One''. 2015; '''10''' (7):e0131310 | |
| Method for 3D airway topology extraction. Description: Grothausmann, Roman, et al. Method for 3D airway topology extraction. ''Comput Math Methods Med''. 2015; '''2015''': 127010 | |
| Multi-Parametric MRI and Texture Analysis to Visualize Spatial Histologic Heterogeneity and Tumor Extent in Glioblastoma. Description: Hu, Leland S, et al. Multi-Parametric MRI and Texture Analysis to Visualize Spatial Histologic Heterogeneity and Tumor Extent in Glioblastoma. ''PLoS One''. 2015; '''10''' (11):e0141506 | |
| Spinal Cord Segmentation by One Dimensional Normalized Template Matching: A Novel, Quantitative Technique to Analyze Advanced Magnetic Resonance Imaging Data. Description: Cadotte, Adam, et al. Spinal Cord Segmentation by One Dimensional Normalized Template Matching: A Novel, Quantitative Technique to Analyze Advanced Magnetic Resonance Imaging Data. ''PLoS One''. 2015; '''10''' (10):e0139323 | |
| The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units. Description: de Bono, Bernard, et al. The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units. ''Front Physiol''. 2015; '''6''': 24 | |
| The pediatric template of brain perfusion. Description: Avants, Brian B, et al. The pediatric template of brain perfusion. ''Sci Data''. 2015; '''2''': 150003 | |
| Towards an easier creation of three-dimensional data for embedding into scholarly 3D PDF (Portable Document Format) files. Description: Newe, Axel. Towards an easier creation of three-dimensional data for embedding into scholarly 3D PDF (Portable Document Format) files. ''PeerJ''. 2015; '''3''': e794 | |
| Automated segmentation of multifocal basal ganglia T2*-weighted MRI hypointensities. Description: Glatz, Andreas, et al. Automated segmentation of multifocal basal ganglia T2*-weighted MRI hypointensities. ''Neuroimage''. 2015 Jan 15; '''105''': 332-46 | |
| Segmentation of bones in magnetic resonance images of the wrist. Description: Wlodarczyk, Justyna, et al. Segmentation of bones in magnetic resonance images of the wrist. ''Int J Comput Assist Radiol Surg''. 2015 Apr; '''10''' (4):419-31 | |
| Engineering the next generation of brain scientists. Description: Litt, Brian. Engineering the next generation of brain scientists. ''Neuron''. 2015 Apr 8; '''86''' (1):16-20 | |
| Development of CBCT-based prostate setup correction strategies and impact of rectal distension. Description: Boydev, Christine, et al. Development of CBCT-based prostate setup correction strategies and impact of rectal distension. ''Radiat Oncol''. 2015 Apr 10; '''10''': 83 | |
| NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics. Description: Johnsen, Stian F, et al. NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics. ''Int J Comput Assist Radiol Surg''. 2015 Jul; '''10''' (7):1077-95 | |
| Metrics for evaluating 3D medical image segmentation: analysis, selection, and tool. Description: Taha, Abdel Aziz, et al. Metrics for evaluating 3D medical image segmentation: analysis, selection, and tool. ''BMC Med Imaging''. 2015 Aug 12; '''15''': 29 | |
| Interactive Volumetry Of Liver Ablation Zones. Description: Egger, Jan, et al. Interactive Volumetry Of Liver Ablation Zones. ''Sci Rep''. 2015 Oct 20; '''5''': 15373 | |
| A semi-automated workflow solution for multimodal neuroimaging: application to patients with traumatic brain injury. Description: Wong, Koon-Pong, et al. A semi-automated workflow solution for multimodal neuroimaging: application to patients with traumatic brain injury. ''Brain Inform''. 2016; '''3''': 1-15 | |
| Automatic Liver Segmentation on Volumetric CT Images Using Supervoxel-Based Graph Cuts. Description: Wu, Weiwei, et al. Automatic Liver Segmentation on Volumetric CT Images Using Supervoxel-Based Graph Cuts. ''Comput Math Methods Med''. 2016; '''2016''': 9093721 | |
| Neonatal Brain Tissue Classification with Morphological Adaptation and Unified Segmentation. Description: Beare, Richard J, et al. Neonatal Brain Tissue Classification with Morphological Adaptation and Unified Segmentation. ''Front Neuroinform''. 2016; '''10''': 12 | |
| CustusX: an open-source research platform for image-guided therapy. Description: Askeland, Christian, et al. CustusX: an open-source research platform for image-guided therapy. ''Int J Comput Assist Radiol Surg''. 2016 Apr; '''11''' (4):505-19 | |
| The first step for neuroimaging data analysis: DICOM to NIfTI conversion. Description: Li, Xiangrui, et al. The first step for neuroimaging data analysis: DICOM to NIfTI conversion. ''J Neurosci Methods''. 2016 May 1; '''264''': 47-56 | |
| Analysis of pairwise correlations in multi-parametric PET/MR data for biological tumor characterization and treatment individualization strategies. Description: Leibfarth, Sara, et al. Analysis of pairwise correlations in multi-parametric PET/MR data for biological tumor characterization and treatment individualization strategies. ''Eur J Nucl Med Mol Imaging''. 2016 Jul; '''43''' (7):1199-208 | |
| Possum-A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections. Description: Majka, Piotr, et al. Possum-A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections. ''Neuroinformatics''. 2016 Jul; '''14''' (3):265-78 | |
| Quantitative BOLD imaging at 3T: Temporal changes in hepatocellular carcinoma and fibrosis following oxygen challenge. Description: Patterson, Andrew J, et al. Quantitative BOLD imaging at 3T: Temporal changes in hepatocellular carcinoma and fibrosis following oxygen challenge. ''J Magn Reson Imaging''. 2016 Sep; '''44''' (3):739-44 | |
| Surface-driven registration method for the structure-informed segmentation of diffusion MR images. Description: Esteban, Oscar, et al. Surface-driven registration method for the structure-informed segmentation of diffusion MR images. ''Neuroimage''. 2016 Oct 1; '''139''': 450-461 | |
| A combined method for correlative 3D imaging of biological samples from macro to nano scale. Description: Kellner, Manuela, et al. A combined method for correlative 3D imaging of biological samples from macro to nano scale. ''Sci Rep''. 2016 Oct 19; '''6''': 35606 | |
| An Evaluation of the Benefits of Simultaneous Acquisition on PET/MR Coregistration in Head/Neck Imaging. Description: Monti, Serena, et al. An Evaluation of the Benefits of Simultaneous Acquisition on PET/MR Coregistration in Head/Neck Imaging. ''J Healthc Eng''. 2017; '''2017''': 2634389 | |
| Simulating Longitudinal Brain MRIs with Known Volume Changes and Realistic Variations in Image Intensity. Description: Khanal, Bishesh, et al. Simulating Longitudinal Brain MRIs with Known Volume Changes and Realistic Variations in Image Intensity. ''Front Neurosci''. 2017; '''11''': 132 | |
| A Comparative Evaluation of 3 Different Free-Form Deformable Image Registration and Contour Propagation Methods for Head and Neck MRI: The Case of Parotid Changes During Radiotherapy. Description: Broggi, Sara, et al. A Comparative Evaluation of 3 Different Free-Form Deformable Image Registration and Contour Propagation Methods for Head and Neck MRI: The Case of Parotid Changes During Radiotherapy. ''Technol Cancer Res Treat''. 2017 Jun; '''16''' (3):373-381 | |
| Efficient Segmentation of a Breast in B-Mode Ultrasound Tomography Using Three-Dimensional GrabCut (GC3D). Description: Yu, Shaode, et al. Efficient Segmentation of a Breast in B-Mode Ultrasound Tomography Using Three-Dimensional GrabCut (GC3D). ''Sensors (Basel)''. 2017 Aug 8; '''17''' (8): | |
| Highly trabeculated structure of the human endocardium underlies asymmetrical response to low-energy monophasic shocks. Description: Connolly, Adam, et al. Highly trabeculated structure of the human endocardium underlies asymmetrical response to low-energy monophasic shocks. ''Chaos''. 2017 Sep; '''27''' (9):093913 | |
| A 3D subject-specific model of the spinal subarachnoid space with anatomically realistic ventral and dorsal spinal cord nerve rootlets. Description: Sass, Lucas R, et al. A 3D subject-specific model of the spinal subarachnoid space with anatomically realistic ventral and dorsal spinal cord nerve rootlets. ''Fluids Barriers CNS''. 2017 Dec 19; '''14''' (1):36 | |
| Improved Surface-Based Registration of CT and Intraoperative 3D Ultrasound of Bones. Description: Fanti, Zian, et al. Improved Surface-Based Registration of CT and Intraoperative 3D Ultrasound of Bones. ''J Healthc Eng''. 2018; '''2018''': 2365178 | |
| RFA Guardian: Comprehensive Simulation of Radiofrequency Ablation Treatment of Liver Tumors. Description: Voglreiter, Philip, et al. RFA Guardian: Comprehensive Simulation of Radiofrequency Ablation Treatment of Liver Tumors. ''Sci Rep''. 2018 Jan 15; '''8''' (1):787 | |
| 3D-Printed masks as a new approach for immobilization in radiotherapy - a study of positioning accuracy. Description: Haefner, Matthias Felix, et al. 3D-Printed masks as a new approach for immobilization in radiotherapy - a study of positioning accuracy. ''Oncotarget''. 2018 Jan 19; '''9''' (5):6490-6498 | |
| Online proton therapy monitoring: clinical test of a Silicon-photodetector-based in-beam PET. Description: Ferrero, Veronica, et al. Online proton therapy monitoring: clinical test of a Silicon-photodetector-based in-beam PET. ''Sci Rep''. 2018 Mar 6; '''8''' (1):4100 | |
| A three-dimensional stereotaxic atlas of the gray short-tailed opossum (Monodelphis domestica) brain. Description: Majka, Piotr, et al. A three-dimensional stereotaxic atlas of the gray short-tailed opossum (Monodelphis domestica) brain. ''Brain Struct Funct''. 2018 May; '''223''' (4):1779-1795 | |
| Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending. Description: Granados, Alejandro, et al. Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending. ''Int J Comput Assist Radiol Surg''. 2018 Jun; '''13''' (6):935-946 |