[#7313] Mac Install Issue.

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State: more information
Open
Date:
2014-03-24 16:15
Priority: more information
3
Submitted By:
Jamie Hanson (jlhanson5)
Assigned To: more information
Nobody (None)
Hardware: 
Macintosh
Product: 
Software A
Operating System: 
MacOS X
Component: 
None
Version: 
None
Severity: 
None
Summary: more information
Mac Install Issue.

Detailed description

Hello Solar folks,

I attempted to install solar for my intel mac (OS 10.9.2) but I think that installation has failed (it is actually unclear). I was just trying to use of the supplemental features of solar at the moment (ped2csv) but haven't had any luck.  

Attached are my terminal output during installation (which seemed off to me). Also is attached a screengrab of my attempting to run one command from the solar suite. I can create a virtual machine (and work on SciLinux) if that is easier; I just thought I would stay with the mac os x version initially. Any thoughts or suggestions are greatly appreciated!

Thanks much!
jamie.

Response

Message

Date: 2014-03-27 11:03
Sender: Peter Kochunov

Hmm, I thought that was a standard library.
Jammie, can you contact me directly at pkochunov@gmail.com


Date: 2014-03-27 10:50
Sender: Jamie Hanson

I installed solar, got the same library error. Searching for that file in finder, yielded no results. Thoughts?


Date: 2014-03-27 10:35
Sender: Peter Kochunov

Jammie,
I think I know what you problem is,
But first, why don't you remove all the installations again and now install it using this command

./install_solar /Users/jamielarshanson/solar/7.4.3 /Users/jamielarshanson/bin solar

if you still get dyld: Library not loaded: /usr/local/lib/libstdc++.6.dylib  error

Can you search for this file by typing this name in the finder ibstdc++.6


Date: 2014-03-27 10:32
Sender: Peter Kochunov

That is perplexing. Has this directory been created?
May I suggest that you remove all these directories and start with the latest beta version?
I have tried it on two of my macs and it went flawless.
pk


Date: 2014-03-27 10:28
Sender: Peter Kochunov

That is perplexing. Has this directory been created?
May I suggest that you remove all these directories and start with the latest beta version?
I have tried it on two of my macs and it went flawless.
pk


Date: 2014-03-27 10:16
Sender: Jamie Hanson

I deleted everything and then redownloaded the new beta version. I then tried to ./install_solar 'pwd' 'pwd' (and that error is after these steps). Are there other files I need to remove or other things I need to do?


Date: 2014-03-27 10:13
Sender: Peter Kochunov

That is perplexing. Has this directory been created?
May I suggest that you remove all these directories and start with the latest beta version?
I have tried it on two of my macs and it went flawless.
pk


Date: 2014-03-27 10:07
Sender: Jamie Hanson

Hmmm, I keep running into the same issue... when I just try to run ./solar, I get "The directory /Users/jamielarshanson/Desktop/solar_mac_intel_beta/bin for solar binaries is not accessible" as an error; terminal output attached. Other thoughts/things I could do to troubleshoot?


Date: 2014-03-25 16:21
Sender: Peter Kochunov

Hi Jamie,
Try the latest version we posted. It resolves the lib path. I have just tested it on my mac and it worked great!
Let me know
peter


Date: 2014-03-25 11:45
Sender: Jamie Hanson

here is everything from installation on...


Jamies-MacBook-Pro:solar_mac_intel jamielarshanson$ ./install_solar 'pwd' 'pwd'

*********************************************
Ignore error message, if any, from test below
dyld: Library not loaded: /usr/local/lib/libstdc++.6.dylib
Referenced from: /Users/jamielarshanson/Desktop/solar_mac_intel/bin/solarmain
Reason: image not found
rlwrap: warning: solarmain killed by SIGTRAP.
rlwrap has not crashed, but for transparency,
it will now kill itself (without dumping core)with the same signal
/Users/jamielarshanson/Desktop/solar_mac_intel/solar: line 37: 6489 Trace/BPT trap: 5 $SOLAR_BIN/rlwrap $SOLAR_BIN/solarmain $*
cp: /Users/jamielarshanson/Desktop/solar_mac_intel/bin/solarmain.old: No such file or directory
test completed
*********************************************
*** Successful SOLAR Installation ***
SOLAR has been installed with the command name solar
The new documentation folder is /Users/jamielarshanson/Desktop/solar_mac_intel/doc
You have Apple X11 installed. SOLAR will automatically
use this for plotting. See README.mac_intel for further details.
Jamies-MacBook-Pro:solar_mac_intel jamielarshanson$ otool -L solar
solar: is not an object file
Jamies-MacBook-Pro:solar_mac_intel jamielarshanson$ otool -L install_solar
install_solar: is not an object file
Jamies-MacBook-Pro:solar_mac_intel jamielarshanson$ otool -L bin/
allfreq domcibd getmeans ibdmat ibdprep mlink multipnt relate snpplotk stringplotk xmgr
arrangeps.py genfreq homo ibdmc makeped mrgibd open-x11a rlwrap solarmain.new unknown
Jamies-MacBook-Pro:solar_mac_intel jamielarshanson$ otool -L bin/solarmain.new
bin/solarmain.new:
/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 159.1.0)
/usr/local/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.12.0)
/usr/local/lib/libgfortran.3.dylib (compatibility version 4.0.0, current version 4.0.0)
/usr/local/lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1.0.0)
Jamies-MacBook-Pro:solar_mac_intel jamielarshanson$


Date: 2014-03-25 10:56
Sender: Peter Kochunov

Hi Jammie,
Can you simply copy the error you get to the body of the email?
It seems to me like you have a simply library path error e.g. the solar doesn't know where some of the dynamic libraries are. This was supposed to be handled during installation. I am trying to replicate this problem on my end.
pk


Date: 2014-03-25 10:27
Sender: Jamie Hanson

Simple/silly question: what file should I otool? I tried both solar and install_solar and got errors (but think that was likely correct).


Date: 2014-03-25 09:27
Sender: Peter Kochunov

Hi Jammie,
For some reason the library path was not properly set or updated
Can you check if this helps?

http://stackoverflow.com/questions/17703...


Date: 2014-03-25 07:57
Sender: Jamie Hanson

I tried again with that updated mac version, but still got some errors.
Terminal output as txt file attached.


Date: 2014-03-24 16:43
Sender: Peter Kochunov

Hi Jamie,
Let us compile a mac version for you. It should be done quickly.

Attached Files:

Name Download
Install_Error.png Download
Execution_Error.png Download
Terminal Saved Output Download
Terminal Saved Output 032714.txt Download

Changes:

Field Old Value Date By
New Message2014-03-27 11:03kochunov
New Message2014-03-27 10:50jlhanson5
New Message2014-03-27 10:35kochunov
New Message2014-03-27 10:32kochunov
New Message2014-03-27 10:28kochunov
New Message2014-03-27 10:16jlhanson5
New Message2014-03-27 10:13kochunov
File Added552: Terminal Saved Output 032714.txt2014-03-27 10:07jlhanson5
New Message2014-03-27 10:07jlhanson5
New Message2014-03-25 16:21kochunov
New Message2014-03-25 11:45jlhanson5
New Message2014-03-25 10:56kochunov
New Message2014-03-25 10:27jlhanson5
New Message2014-03-25 09:27kochunov
File Added551: Terminal Saved Output2014-03-25 07:57jlhanson5
New Message2014-03-25 07:57jlhanson5
New Message2014-03-24 16:43kochunov
File Added550: Execution_Error.png2014-03-24 16:15jlhanson5
File Added549: Install_Error.png2014-03-24 16:15jlhanson5