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Coordinates v1 - v1.01
Updated: Sep 7, 2017
Coordinate system orientation v1 - v1.01
Updated: Nov 25, 2016
Overview of shared atlas and template files
Updated: Nov 25, 2016
Release notes v1.01
Updated: Nov 25, 2016
Release notes v2
Updated: Nov 25, 2016
Publications ( 3 )+
PubMed Mentions ( 12 )+
3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas.
Description: Schubert, Nicole, et al. 3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas. ''Front Neuroanat''. 2016; '''10''': 51
Updated: Nov 23, 2019
Quantitative Susceptibility Mapping-Based Microscopy of Magnetic Resonance Venography (QSM-mMRV) for In Vivo Morphologically and Functionally Assessing Cerebromicrovasculature in Rat Stroke Model.
Description: Hsieh, Meng-Chi, et al. Quantitative Susceptibility Mapping-Based Microscopy of Magnetic Resonance Venography (QSM-mMRV) for In Vivo Morphologically and Functionally Assessing Cerebromicrovasculature in Rat Stroke Model. ''PLoS One''. 2016; '''11''' (3):e0149602
Updated: Nov 23, 2019
Uptake and retention of manganese contrast agents for PET and MRI in the rodent brain.
Description: Brunnquell, Christina L, et al. Uptake and retention of manganese contrast agents for PET and MRI in the rodent brain. ''Contrast Media Mol Imaging''. 2016 Sep; '''11''' (5):371-380
Updated: Nov 23, 2019
Longitudinal magnetic resonance imaging reveals striatal hypertrophy in a rat model of long-term stimulant treatment.
Description: Biezonski, D, et al. Longitudinal magnetic resonance imaging reveals striatal hypertrophy in a rat model of long-term stimulant treatment. ''Transl Psychiatry''. 2016 Sep 6; '''6''' (9):e884
Updated: Nov 23, 2019
Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas.
Description: Dempsey, Bowen, et al. Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas. ''Front Neural Circuits''. 2017; '''11''': 9
Updated: Nov 23, 2019
Investigating hyperoxic effects in the rat brain using quantitative susceptibility mapping based on MRI phase.
Description: Hsieh, Meng-Chi, et al. Investigating hyperoxic effects in the rat brain using quantitative susceptibility mapping based on MRI phase. ''Magn Reson Med''. 2017 Feb; '''77''' (2):592-602
Updated: Nov 23, 2019
Dorsal root ganglion stimulation attenuates the BOLD signal response to noxious sensory input in specific brain regions: Insights into a possible mechanism for analgesia.
Description: Pawela, Christopher P, et al. Dorsal root ganglion stimulation attenuates the BOLD signal response to noxious sensory input in specific brain regions: Insights into a possible mechanism for analgesia. ''Neuroimage''. 2017 Feb 15; '''147''': 10-18
Updated: Nov 23, 2019
Differentiation of the Infarct Core from Ischemic Penumbra within the First 4.5 Hours, Using Diffusion Tensor Imaging-Derived Metrics: A Rat Model.
Description: Kuo, Duen-Pang, et al. Differentiation of the Infarct Core from Ischemic Penumbra within the First 4.5 Hours, Using Diffusion Tensor Imaging-Derived Metrics: A Rat Model. ''Korean J Radiol''. 2017 Mar-Apr; '''18''' (2):269-278
Updated: Nov 23, 2019
Connecting imaging mass spectrometry and magnetic resonance imaging-based anatomical atlases for automated anatomical interpretation and differential analysis.
Description: Verbeeck, Nico, et al. Connecting imaging mass spectrometry and magnetic resonance imaging-based anatomical atlases for automated anatomical interpretation and differential analysis. ''Biochim Biophys Acta Proteins Proteom''. 2017 Jul; '''1865''' (7):967-977
Updated: Nov 23, 2019
RNA-seq analyses reveal that cervical spinal cords and anterior motor neurons from amyotrophic lateral sclerosis subjects show reduced expression of mitochondrial DNA-encoded respiratory genes, and rhTFAM may correct this respiratory deficiency.
Description: Ladd, Amy C, et al. RNA-seq analyses reveal that cervical spinal cords and anterior motor neurons from amyotrophic lateral sclerosis subjects show reduced expression of mitochondrial DNA-encoded respiratory genes, and rhTFAM may correct this respiratory deficiency. ''Brain Res''. 2017 Jul 15; '''1667''': 74-83
Updated: Nov 23, 2019
The rat corticospinal system is functionally and anatomically segregated.
Description: Olivares-Moreno, Rafael, et al. The rat corticospinal system is functionally and anatomically segregated. ''Brain Struct Funct''. 2017 Dec; '''222''' (9):3945-3958
Updated: Nov 23, 2019
The SIGMA rat brain templates and atlases for multimodal MRI data analysis and visualization.
Description: Barriere, D A, et al. The SIGMA rat brain templates and atlases for multimodal MRI data analysis and visualization. ''Nat Commun''. 2019 Dec 13; '''10''' (1):5699
Updated: Jan 11, 2020