PubMed Mentions
The links below are to publications on PubMed referring to Waxholm Space Atlas of the Sprague Dawley Rat Brain. This list is gathered weekly from PubMed automatically and was last updated on February 14, 2026.
| Publication/References | |
| 3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas. Description: Schubert, Nicole, et al. 3D Reconstructed Cyto-, Muscarinic M2 Receptor, and Fiber Architecture of the Rat Brain Registered to the Waxholm Space Atlas. ''Front Neuroanat''. 2016; '''10''': 51 | |
| Quantitative Susceptibility Mapping-Based Microscopy of Magnetic Resonance Venography (QSM-mMRV) for In Vivo Morphologically and Functionally Assessing Cerebromicrovasculature in Rat Stroke Model. Description: Hsieh, Meng-Chi, et al. Quantitative Susceptibility Mapping-Based Microscopy of Magnetic Resonance Venography (QSM-mMRV) for In Vivo Morphologically and Functionally Assessing Cerebromicrovasculature in Rat Stroke Model. ''PLoS One''. 2016; '''11''' (3):e0149602 | |
| Uptake and retention of manganese contrast agents for PET and MRI in the rodent brain. Description: Brunnquell, Christina L, et al. Uptake and retention of manganese contrast agents for PET and MRI in the rodent brain. ''Contrast Media Mol Imaging''. 2016 Sep; '''11''' (5):371-380 | |
| Longitudinal magnetic resonance imaging reveals striatal hypertrophy in a rat model of long-term stimulant treatment. Description: Biezonski, D, et al. Longitudinal magnetic resonance imaging reveals striatal hypertrophy in a rat model of long-term stimulant treatment. ''Transl Psychiatry''. 2016 Sep 6; '''6''' (9):e884 | |
| Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas. Description: Dempsey, Bowen, et al. Mapping and Analysis of the Connectome of Sympathetic Premotor Neurons in the Rostral Ventrolateral Medulla of the Rat Using a Volumetric Brain Atlas. ''Front Neural Circuits''. 2017; '''11''': 9 | |
| Investigating hyperoxic effects in the rat brain using quantitative susceptibility mapping based on MRI phase. Description: Hsieh, Meng-Chi, et al. Investigating hyperoxic effects in the rat brain using quantitative susceptibility mapping based on MRI phase. ''Magn Reson Med''. 2017 Feb; '''77''' (2):592-602 | |
| Dorsal root ganglion stimulation attenuates the BOLD signal response to noxious sensory input in specific brain regions: Insights into a possible mechanism for analgesia. Description: Pawela, Christopher P, et al. Dorsal root ganglion stimulation attenuates the BOLD signal response to noxious sensory input in specific brain regions: Insights into a possible mechanism for analgesia. ''Neuroimage''. 2017 Feb 15; '''147''': 10-18 | |
| Differentiation of the Infarct Core from Ischemic Penumbra within the First 4.5 Hours, Using Diffusion Tensor Imaging-Derived Metrics: A Rat Model. Description: Kuo, Duen-Pang, et al. Differentiation of the Infarct Core from Ischemic Penumbra within the First 4.5 Hours, Using Diffusion Tensor Imaging-Derived Metrics: A Rat Model. ''Korean J Radiol''. 2017 Mar-Apr; '''18''' (2):269-278 | |
| Connecting imaging mass spectrometry and magnetic resonance imaging-based anatomical atlases for automated anatomical interpretation and differential analysis. Description: Verbeeck, Nico, et al. Connecting imaging mass spectrometry and magnetic resonance imaging-based anatomical atlases for automated anatomical interpretation and differential analysis. ''Biochim Biophys Acta Proteins Proteom''. 2017 Jul; '''1865''' (7):967-977 | |
| RNA-seq analyses reveal that cervical spinal cords and anterior motor neurons from amyotrophic lateral sclerosis subjects show reduced expression of mitochondrial DNA-encoded respiratory genes, and rhTFAM may correct this respiratory deficiency. Description: Ladd, Amy C, et al. RNA-seq analyses reveal that cervical spinal cords and anterior motor neurons from amyotrophic lateral sclerosis subjects show reduced expression of mitochondrial DNA-encoded respiratory genes, and rhTFAM may correct this respiratory deficiency. ''Brain Res''. 2017 Jul 15; '''1667''': 74-83 | |
| The rat corticospinal system is functionally and anatomically segregated. Description: Olivares-Moreno, Rafael, et al. The rat corticospinal system is functionally and anatomically segregated. ''Brain Struct Funct''. 2017 Dec; '''222''' (9):3945-3958 | |
| Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion tensor magnetic resonance imaging. Description: Osen, Kirsten K, et al. Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion tensor magnetic resonance imaging. ''Neuroimage''. 2019 Oct 1; '''199''': 38-56 | |
| The SIGMA rat brain templates and atlases for multimodal MRI data analysis and visualization. Description: Barriere, D A, et al. The SIGMA rat brain templates and atlases for multimodal MRI data analysis and visualization. ''Nat Commun''. 2019 Dec 13; '''10''' (1):5699 | |
| Database of literature derived cellular measurements from the murine basal ganglia. Description: Bjerke, Ingvild E, et al. Database of literature derived cellular measurements from the murine basal ganglia. ''Sci Data''. 2020 Jul 6; '''7''' (1):211 | |
| Early, Intense Rehabilitation Fails to Improve Outcome After Intra-Striatal Hemorrhage in Rats. Description: Fedor, Britt A, et al. Early, Intense Rehabilitation Fails to Improve Outcome After Intra-Striatal Hemorrhage in Rats. ''Neurorehabil Neural Repair''. 2022 Dec; '''36''' (12):788-799 | |
| Histological E-data Registration in rodent Brain Spaces. Description: Fuglstad, Jingyi Guo, et al. Histological E-data Registration in rodent Brain Spaces. ''Elife''. 2023 Jan 13; '''12''': | |
| Are standing osmotic gradients the main driver of cerebrospinal fluid production? A computational analysis. Description: Razzaghi Khamesi, Pooya, et al. Are standing osmotic gradients the main driver of cerebrospinal fluid production? A computational analysis. ''Fluids Barriers CNS''. 2023 Mar 13; '''20''' (1):18 | |
| A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia. Description: Blixhavn, Camilla H, et al. A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia. ''Sci Data''. 2023 Mar 21; '''10''' (1):150 | |
| Spike-based coupling between single neurons and populations across rat sensory cortices, perirhinal cortex, and hippocampus. Description: Dorman, Reinder, et al. Spike-based coupling between single neurons and populations across rat sensory cortices, perirhinal cortex, and hippocampus. ''Cereb Cortex''. 2023 Jun 20; '''33''' (13):8247-8264 | |
| AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures. Description: Kleven, Heidi, et al. AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures. ''Sci Data''. 2023 Jul 26; '''10''' (1):486 | |
| The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain. Description: Reiten, Ingrid, et al. The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain. ''Sci Data''. 2023 Sep 21; '''10''' (1):645 | |
| Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration. Description: Kleven, Heidi, et al. Waxholm Space atlas of the rat brain: a 3D atlas supporting data analysis and integration. ''Nat Methods''. 2023 Nov; '''20''' (11):1822-1829 | |
| The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases. Description: Blixhavn, Camilla H, et al. The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases. ''Front Neuroinform''. 2024; '''18''': 1284107 | |
| Oxytocin-induced birth causes sex-specific behavioral and brain connectivity changes in developing rat offspring. Description: Giri, Tusar, et al. Oxytocin-induced birth causes sex-specific behavioral and brain connectivity changes in developing rat offspring. ''iScience''. 2024 Feb 16; '''27''' (2):108960 | |
| Development and advancements in rodent MRI-based brain atlases. Description: Ma, Xiaoyi, et al. Development and advancements in rodent MRI-based brain atlases. ''Heliyon''. 2024 Mar 30; '''10''' (6):e27421 | |
| Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space. Description: Kleven, H, et al. Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space. ''Sci Data''. 2024 Sep 27; '''11''' (1):1036 | |
| Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization. Description: Ovsthus, Martin, et al. Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization. ''Sci Data''. 2024 Nov 12; '''11''' (1):1214 | |
| Optogenetic stimulation of the median preoptic nucleus: Effects on hypothalamic paraventricular nucleus magnocellular neurons after chronic intermittent hypoxia exposure. Description: Paundralingga, Obed T, et al. Optogenetic stimulation of the median preoptic nucleus: Effects on hypothalamic paraventricular nucleus magnocellular neurons after chronic intermittent hypoxia exposure. ''J Neuroendocrinol''. 2026 Jan; '''38''' (1):e70100 |