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help > How to plot the result of each conditions in CONN?
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Apr 5, 2023 03:04 AM | chenglin123
How to plot the result of each conditions in CONN?
I meet a problem when I revised a manuscript.
I used CONN to investegate the functional connectivity between seed-to-voxel by gPPI. I have reportrf the group results with mian effects and interaction effects, but the reviewer want me to show the results of different levels. for example, I have a factor X include two levels (A and B), another factor Y include three levels (C, D, E). so in total, I have 6 conditions in the second level analysis. I only can define the contrast for the main effects of factor X and Y, and interaction between X and Y.
so is there any way to show the result of level A, B, C, D, E, respectivetly?
I really need your help, thank you.
Bests,
Chenglin
I used CONN to investegate the functional connectivity between seed-to-voxel by gPPI. I have reportrf the group results with mian effects and interaction effects, but the reviewer want me to show the results of different levels. for example, I have a factor X include two levels (A and B), another factor Y include three levels (C, D, E). so in total, I have 6 conditions in the second level analysis. I only can define the contrast for the main effects of factor X and Y, and interaction between X and Y.
so is there any way to show the result of level A, B, C, D, E, respectivetly?
I really need your help, thank you.
Bests,
Chenglin
Apr 11, 2023 11:04 AM | Alfonso Nieto-Castanon - Boston University
RE: How to plot the result of each conditions in CONN?
Hi Chenglin,
You may just click on the 'plot effects' button (the one with a barplot icon) in the results explorer window to display the effects in each individual condition / levels of your factor separately. That will display a barplot, with 6 bars for each cluster that was found significant in your results, describing the effects separately within each level of your 2x3 design.
Best
Alfonso
Originally posted by chenglin123:
You may just click on the 'plot effects' button (the one with a barplot icon) in the results explorer window to display the effects in each individual condition / levels of your factor separately. That will display a barplot, with 6 bars for each cluster that was found significant in your results, describing the effects separately within each level of your 2x3 design.
Best
Alfonso
Originally posted by chenglin123:
I meet a problem when I revised a
manuscript.
I used CONN to investegate the functional connectivity between seed-to-voxel by gPPI. I have reportrf the group results with mian effects and interaction effects, but the reviewer want me to show the results of different levels. for example, I have a factor X include two levels (A and B), another factor Y include three levels (C, D, E). so in total, I have 6 conditions in the second level analysis. I only can define the contrast for the main effects of factor X and Y, and interaction between X and Y.
so is there any way to show the result of level A, B, C, D, E, respectivetly?
I really need your help, thank you.
Bests,
Chenglin
I used CONN to investegate the functional connectivity between seed-to-voxel by gPPI. I have reportrf the group results with mian effects and interaction effects, but the reviewer want me to show the results of different levels. for example, I have a factor X include two levels (A and B), another factor Y include three levels (C, D, E). so in total, I have 6 conditions in the second level analysis. I only can define the contrast for the main effects of factor X and Y, and interaction between X and Y.
so is there any way to show the result of level A, B, C, D, E, respectivetly?
I really need your help, thank you.
Bests,
Chenglin
Apr 12, 2023 12:04 AM | chenglin123
RE: How to plot the result of each conditions in CONN?
Dear Alfonso,
many thanks. I have seen the barplot. may I ask a question further? how can I export the exact value for each bar? I want to plot this figure by myself as I have lots of clusters. i need to design the presentation of each cluster.
Bests,
Chenglin
Originally posted by Alfonso Nieto-Castanon:
many thanks. I have seen the barplot. may I ask a question further? how can I export the exact value for each bar? I want to plot this figure by myself as I have lots of clusters. i need to design the presentation of each cluster.
Bests,
Chenglin
Originally posted by Alfonso Nieto-Castanon:
Hi
Chenglin,
You may just click on the 'plot effects' button (the one with a barplot icon) in the results explorer window to display the effects in each individual condition / levels of your factor separately. That will display a barplot, with 6 bars for each cluster that was found significant in your results, describing the effects separately within each level of your 2x3 design.
Best
Alfonso
Originally posted by chenglin123:
You may just click on the 'plot effects' button (the one with a barplot icon) in the results explorer window to display the effects in each individual condition / levels of your factor separately. That will display a barplot, with 6 bars for each cluster that was found significant in your results, describing the effects separately within each level of your 2x3 design.
Best
Alfonso
Originally posted by chenglin123:
I meet a problem when I revised a
manuscript.
I used CONN to investegate the functional connectivity between seed-to-voxel by gPPI. I have reportrf the group results with mian effects and interaction effects, but the reviewer want me to show the results of different levels. for example, I have a factor X include two levels (A and B), another factor Y include three levels (C, D, E). so in total, I have 6 conditions in the second level analysis. I only can define the contrast for the main effects of factor X and Y, and interaction between X and Y.
so is there any way to show the result of level A, B, C, D, E, respectivetly?
I really need your help, thank you.
Bests,
Chenglin
I used CONN to investegate the functional connectivity between seed-to-voxel by gPPI. I have reportrf the group results with mian effects and interaction effects, but the reviewer want me to show the results of different levels. for example, I have a factor X include two levels (A and B), another factor Y include three levels (C, D, E). so in total, I have 6 conditions in the second level analysis. I only can define the contrast for the main effects of factor X and Y, and interaction between X and Y.
so is there any way to show the result of level A, B, C, D, E, respectivetly?
I really need your help, thank you.
Bests,
Chenglin
Apr 13, 2023 01:04 AM | Alfonso Nieto-Castanon - Boston University
RE: How to plot the result of each conditions in CONN?
Dear Chenglin,
Yes, you may simply right-click (or command-click if on a Mac) on the stats list at the bottom of that display and select the option 'export effect-sizes' (to save the values used in those barplots and errorbars), or you may also use the option 'export raw data' to save the effect-size values separately for each subject displayed in those results (note: you may need to update to the latest release of CONN to have some of these options available)
Best
Alfonso
Originally posted by chenglin123:
Yes, you may simply right-click (or command-click if on a Mac) on the stats list at the bottom of that display and select the option 'export effect-sizes' (to save the values used in those barplots and errorbars), or you may also use the option 'export raw data' to save the effect-size values separately for each subject displayed in those results (note: you may need to update to the latest release of CONN to have some of these options available)
Best
Alfonso
Originally posted by chenglin123:
Dear Alfonso,
many thanks. I have seen the barplot. may I ask a question further? how can I export the exact value for each bar? I want to plot this figure by myself as I have lots of clusters. i need to design the presentation of each cluster.
Bests,
Chenglin
Originally posted by Alfonso Nieto-Castanon:
many thanks. I have seen the barplot. may I ask a question further? how can I export the exact value for each bar? I want to plot this figure by myself as I have lots of clusters. i need to design the presentation of each cluster.
Bests,
Chenglin
Originally posted by Alfonso Nieto-Castanon:
Hi
Chenglin,
You may just click on the 'plot effects' button (the one with a barplot icon) in the results explorer window to display the effects in each individual condition / levels of your factor separately. That will display a barplot, with 6 bars for each cluster that was found significant in your results, describing the effects separately within each level of your 2x3 design.
Best
Alfonso
Originally posted by chenglin123:
You may just click on the 'plot effects' button (the one with a barplot icon) in the results explorer window to display the effects in each individual condition / levels of your factor separately. That will display a barplot, with 6 bars for each cluster that was found significant in your results, describing the effects separately within each level of your 2x3 design.
Best
Alfonso
Originally posted by chenglin123:
I meet a problem when I revised a
manuscript.
I used CONN to investegate the functional connectivity between seed-to-voxel by gPPI. I have reportrf the group results with mian effects and interaction effects, but the reviewer want me to show the results of different levels. for example, I have a factor X include two levels (A and B), another factor Y include three levels (C, D, E). so in total, I have 6 conditions in the second level analysis. I only can define the contrast for the main effects of factor X and Y, and interaction between X and Y.
so is there any way to show the result of level A, B, C, D, E, respectivetly?
I really need your help, thank you.
Bests,
Chenglin
I used CONN to investegate the functional connectivity between seed-to-voxel by gPPI. I have reportrf the group results with mian effects and interaction effects, but the reviewer want me to show the results of different levels. for example, I have a factor X include two levels (A and B), another factor Y include three levels (C, D, E). so in total, I have 6 conditions in the second level analysis. I only can define the contrast for the main effects of factor X and Y, and interaction between X and Y.
so is there any way to show the result of level A, B, C, D, E, respectivetly?
I really need your help, thank you.
Bests,
Chenglin
Jun 11, 2026 11:06 AM | Armin Toghi
RE: How to plot the result of each conditions in CONN?
Dear Alfonso,
Regarding the effect size plots I plot the figure using values in 'export effect-size' and then plot the individual data points inside each bar plot (from 'export raw data'). I attached the picture: it seems they dont match. I think there might be some adjustment for analysing the raw data, which doesnt simply represent the mean values of raw data for each condition. Could you please guide me on this. Is it wrong to plot the individual raw points on the current the effect size plot ?
Best,
Armin