CONN : functional connectivity toolbox
CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, group ICA, masked ICA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package
CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.
Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
http://www.conn-toolbox.org
Specifications
Associations
Recent Activity - Forums
How to interpret interaction of group*condition results posted by sumne 13 hours ago
Error in importing Conn preprocessed data posted by JUNG HEE HA 19 hours ago
RE: File modified or relocated. Please load file again. posted by Alexa Chen on Feb 1
RE: 2x2 ANOVA setup posted by Victor Pando-Naude on Feb 1
Add additional subjects using Import fMRIPrep feature posted by erinkim791 on Feb 1
post-hoc group contrast analysis posted by Lenore Tahara-Eckl on Feb 1
Res-fMRI analysis not computed yet posted by ashwag on Jan 30
Secondary analysis with selected preprocessed images of conn posted by Yoo Hyun um on Jan 30
Recent Activity - News
CONN new release posted by Alfonso Nieto-Castanon on Feb 18, 2020
New CONN release and tutorials posted by Alfonso Nieto-Castanon on Jun 27, 2017
CONN New Year News posted by Alfonso Nieto-Castanon on Jan 12, 2017
CONN new release (15f) posted by Alfonso Nieto-Castanon on Sep 25, 2015
Announcing Cincinnati CONN course (MGH/HST) posted by Alfonso Nieto-Castanon on Jun 9, 2015
CONN v.13n Released posted by Alfonso Nieto-Castanon on Jul 8, 2013
conn toolbox version 13 released posted by Alfonso Nieto-Castanon on Oct 31, 2011
Batch script for analyzing the NYU_CSC dataset posted by Alfonso Nieto-Castanon on Sep 16, 2009
Recent Activity - Files
conn21a.zip posted by Alfonso Nieto-Castanon on Dec 31, 2021
conn: older releases: conn v.20.b (last 2020 release) release
conn20b.zip posted by Alfonso Nieto-Castanon on Dec 1, 2020
conn: older releases: conn v.19.c (last 2019 release) release
conn19c.zip posted by Alfonso Nieto-Castanon on Mar 14, 2020
conn: older releases: conn v.18.b (last 2018 release) release
conn18b.zip posted by Alfonso Nieto-Castanon on Dec 19, 2018