CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, group ICA, masked ICA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs

Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12

http://www.conn-toolbox.org
Download Now Download Now
OR See All Files

Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

Associations


Recent Activity

Show: 
Forum Activity

help forum

RE: Mediation analyses posted by Heidi Jacobs 17 hours ago

Forum Activity

help forum

RE: slice timing correction posted by Patrick McConnell on Nov 16

Forum Activity

help forum

RE: How to denoise with global correlation  posted by Stephen L. on Nov 16

Forum Activity

help forum

Connectivity measures for test-retest fmri  posted by Simone ViganĂ² on Nov 16

Forum Activity

help forum

RE: Preprocessing: error using Reshape posted by gabriele pasqua on Nov 16

Forum Activity

help forum

Surface display posted by Sami Abboud on Nov 14

Forum Activity

help forum

warning: no constant term modeled posted by Clas Linnman on Nov 13

Forum Activity

help forum

warning: no constant term modeled posted by Vaughn Bryant on Nov 13

Forum Activity

help forum

QA artifacts: ART GS changes & movement ts posted by hcerit on Nov 10

Forum Activity

help forum

Can't Find MNI created ROIs for 1st level  posted by Vaughn Bryant on Nov 9