I need a bit of help.

I found an explanation of the output data from each step in CONN project files,

https://www.nitrc.org/forum/message.php?msg_id=18633 

but it seems outdated. Could someone summarize it for me, especially the outputs of the denoising step? I need the denoised data to use in another MATLAB function.

Thanks,
Richard

Hi Richard,

If you are running denoising using the GUI or batch scripts the denoised functional data will be stored in the same directory/location as your original functional data, but with a filename prefix that reflects the steps performed during preprocessing and denoising (e.g. dswauFUNCTIONAL.nii if your original data was named FUNCTIONAL.nii, indicating the following steps in reverse order: 'u' for realign&unwarp, 'a' for slice-timing correction, 'w' for MNI-normalization, 's' for smoothing, and 'd' for denoising)

Hope this helps (I have also updated this information in https://web.conn-toolbox.org/fmri-method... and in https://web.conn-toolbox.org/fmri-method... for future reference)

Alfonso

Originally posted by richardks:

I need a bit of help.

I found an explanation of the output data from each step in CONN project files,

https://www.nitrc.org/forum/message.php?msg_id=18633 

but it seems outdated. Could someone summarize it for me, especially the outputs of the denoising step? I need the denoised data to use in another MATLAB function.

Thanks,
Richard