Hi,

I have already run some analyses in conn and then decided to add a new ROI. I know once I add it I need to rerun the pipeline, but can skip already preprocessed subjects/ROIs. After I do that I keep getting errors on my jobs. This is the error

ERROR DESCRIPTION:

Error using save

Can not write file /path/to/conn/project

Error in conn_process (line 617) save (filename, 'data', 'names');

Error in conn_process (line 55)

case 'setup', conn_disp (['CONN: RUNNING SETUP STEP' ]); conn_proces:

Error in conn_jobmanager (line 892)

conn_process (job (n). fcn, job(n) .argsf2: end}) ;

CONN v. 22.2407

SPM25 + DAiSS DEM FieldMap MEEGtools Matlab v. 2018a storage: 186279.8Gb available

spm @ /toolboxes/spm conn @ /toolboxes/conn

This started happening after our cluster went through some data migration. I'm thinking if some of the files got corrupted, but hard to tell. I will try the other option "overwrite existing results" and see if that works.

Thanks.

Hi Jose,

I am not sure but it looks like either a permissions or a path problem (the folder where CONN is expecting to save your new ROI data either no longer exists or it is not accessible). If there was a data migration in your cluster I would suggest re-loading your CONN project and trying again (when re-loading your project CONN will automatically check that all of the project files and folders are still there and ask you to locate them if they are not found, so I am thinking this may fix this issue...)

Hope this helps

Alfonso

Originally posted by Jose Maximo:

Hi,

I have already run some analyses in conn and then decided to add a new ROI. I know once I add it I need to rerun the pipeline, but can skip already preprocessed subjects/ROIs. After I do that I keep getting errors on my jobs. This is the error

ERROR DESCRIPTION:

Error using save

Can not write file /path/to/conn/project

Error in conn_process (line 617) save (filename, 'data', 'names');

Error in conn_process (line 55)

case 'setup', conn_disp (['CONN: RUNNING SETUP STEP' ]); conn_proces:

Error in conn_jobmanager (line 892)

conn_process (job (n). fcn, job(n) .argsf2: end}) ;

CONN v. 22.2407

SPM25 + DAiSS DEM FieldMap MEEGtools Matlab v. 2018a storage: 186279.8Gb available

spm @ /toolboxes/spm conn @ /toolboxes/conn

This started happening after our cluster went through some data migration. I'm thinking if some of the files got corrupted, but hard to tell. I will try the other option "overwrite existing results" and see if that works.

Thanks.

Hi,

I made sure to have the permission or paths were correct, but still get the same error. The file that cant write is COV_Subject001_Session01.mat The console output tells me that the process stops at Step 3/7 Importing conditions/covariates.

When I move to the denoising tab where I already have preprocessed data, I get the following error

ERROR DESCRIPTION:
 
Error using load
Unable to read MAT-file /data/project/COV_Subject007_Session001.mat. Not a binary MAT-file. Try load -ASCII to read as text.

Error in conn_loadmatfile (line 64)
 data=load(conn_server('util_localfile',filename),varargin{cellfun(@(x)~isequal(x,'-cache'),varargin)});

Error in conn (line 6892)
 CONN_h.menus.m_preproc.X2=conn_loadmatfile(filename,DOREM{3}{:});
CONN22.v2407
SPM12 + DEM FieldMap MEEGtools TFCE cat12
Matlab v.2018a
project: CONN22.v2407
storage: 185567.4Gb available
 
spm @ /data/project/lahtilab/lutherl/toolboxes/spm12
conn @ /data/project/lahtilab/lutherl/toolboxes/conn22b

Thank you.