Alfonso,

Thanks for your reply on my previous conn_batch email.

I have another question that I am less sure of. When I run a batch analysis for 'IntrinsicConnectivityContrast' with these lines:

clear batch;
batch.Analysis.type = 3;
batch.Analysis.analysis_number=0;
batch.Analysis.measures{1}='IntrinsicConnectivityContrast';
batch.Analysis.done=1;
conn_batch(batch);It runs fine, but the output in the matlab window is:CONN: RUNNING ANALYSIS STEPStep 5/6: Voxel-to-voxel first-level analysesStep 5/6: connectome-level MVPA analysescomputing subject x subject covariance100.0%computing MVPA components100.0%creating MVPA score volumes100.0%    'save'I'm confused about all the references to MVPA. Also, the results/firstlevel directory BETA images all have five components, which seems like MVPA, and yet the _list_measures.txt file lists IntrinsicConnectivityContrast as the only measure.Many Thanks!Jim

Hi Jim,

I am not totally sure about this one yet, would you mind trying if the attached patch would seem to fix this issue? (you are right that given your batch definition the toolbox should not be running any of the MVPA analysis steps)

Best
Alfonso
Originally posted by James Lee: