open-discussion > Something is wrong in processing data
Showing 1-5 of 5 posts
Jul 2, 2012 11:07 AM | benton benton
Something is wrong in processing data
Thankyou for MR Cui publishing the PANDA software. The UIs are
friendly easy to use.But in my first time running data the software
went wrong,reporting : something is wrong please lookup
..../logs/dti_pipeline.loginfo for more information.
The following is the textual content of dti_pipeline.loginfo file:
--------------------
The following is the textual content of dti_pipeline.loginfo file:
--------------------
Jul 2, 2012 11:07 AM | benton benton
RE: Something is wrong in processing data
The following is the textual content of dti_pipeline.loginfo file:
--------------------
3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/Share_92_2/soft_installed/afni:/Share_92_2/soft_installed/freesurfer/bin:/Share_92_2/soft_installed/afni:/Share_92_2/soft_installed/freesurfer/bin)
< M A T L A B (R) >
Copyright 1984-2009 The MathWorks, Inc.
Version 7.8.0.347 (R2009a) 64-bit (glnxa64)
February 12, 2009
{Warning: Duplicate directory name: /home/xxxxx/matlab.}
{Warning: Duplicate directory name: /usr/Matlab2009a/toolbox/local.}
{Warning: Duplicate directory name: /home/xxxxx/matlab.}
To get started, type one of these: helpwin, helpdesk, or demo.
For product information,
The specified file is not in DICOM format.
dicominfo in /usr/Matlab2009a/toolbox/images/iptformats/dicominfo.m at 39
g_Calculate_Sequence in /Share_92_1/dangchao/mytbss/PANDA-1.1.0_64/g_Calculate_Sequence.m at 11
g_dti_pipeline in /Share_92_1/dangchao/mytbss/PANDA-1.1.0_64/g_dti_pipeline.m at 151
--------------------
3.3/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/Share_92_2/soft_installed/afni:/Share_92_2/soft_installed/freesurfer/bin:/Share_92_2/soft_installed/afni:/Share_92_2/soft_installed/freesurfer/bin)
< M A T L A B (R) >
Copyright 1984-2009 The MathWorks, Inc.
Version 7.8.0.347 (R2009a) 64-bit (glnxa64)
February 12, 2009
{Warning: Duplicate directory name: /home/xxxxx/matlab.}
{Warning: Duplicate directory name: /usr/Matlab2009a/toolbox/local.}
{Warning: Duplicate directory name: /home/xxxxx/matlab.}
To get started, type one of these: helpwin, helpdesk, or demo.
For product information,
The specified file is not in DICOM format.
dicominfo in /usr/Matlab2009a/toolbox/images/iptformats/dicominfo.m at 39
g_Calculate_Sequence in /Share_92_1/dangchao/mytbss/PANDA-1.1.0_64/g_Calculate_Sequence.m at 11
g_dti_pipeline in /Share_92_1/dangchao/mytbss/PANDA-1.1.0_64/g_dti_pipeline.m at 151
Jul 2, 2012 11:07 AM | benton benton
RE: Something is wrong in processing data
dir tree
|-- NC007
| |-- NC007.nii
| |-- bvals
| `-- bvecs
|-- NC008
| |-- NC008.nii
| |-- bvals
| `-- bvecs
|-- NC009
| |-- NC009.nii
| |-- bvals
| `-- bvecs
|-- NC010
| |-- NC010.nii
| |-- bvals
| `-- bvecs
Jul 2, 2012 11:07 AM | Zaixu Cui
RE: Something is wrong in processing data
Dear,
It seemed that your input is not correct.
The input of PANDA has a certain rule.
As your dir tree indicated, NC007 is the input of a subject.
However, PANDA requires you to create several sub-folders under the input of a subject.
The quantity of sub-folders is equal to the quality of scans.
For your data, subject NC007 has been scanned one time.
So you should create one sub-folder under NC007, and put the "NC007.nii, bvals, bvecs" in this sub-folder.
Then, NC007 can be input.
Best,
Zaixu
It seemed that your input is not correct.
The input of PANDA has a certain rule.
As your dir tree indicated, NC007 is the input of a subject.
However, PANDA requires you to create several sub-folders under the input of a subject.
The quantity of sub-folders is equal to the quality of scans.
For your data, subject NC007 has been scanned one time.
So you should create one sub-folder under NC007, and put the "NC007.nii, bvals, bvecs" in this sub-folder.
Then, NC007 can be input.
Best,
Zaixu
Jul 2, 2012 12:07 PM | benton benton
RE: Something is wrong in processing data
Thankyou for your kindly answer, The problem was successfully
solved
