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open-discussion > PANDA not talking to FSL
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Jul 27, 2012 04:07 AM | Paul Sowman
PANDA not talking to FSL
Hi I wonder if you have any idea why my PANDA task always fails at
the
second step. I have attached the logs. It seems to be an error with
CalculateJobStatusMain. i.e.
{ Error using CalculateJobStatusMain (line 15)
Not enough input arguments.
}
The first step dcm2nii completes but then the b0 extraction fails.
Any advice would be appreciated. I'm keen to use PANDA for my analyses. It looks great.
Sincerely, Paul
second step. I have attached the logs. It seems to be an error with
CalculateJobStatusMain. i.e.
{ Error using CalculateJobStatusMain (line 15)
Not enough input arguments.
}
The first step dcm2nii completes but then the b0 extraction fails.
Any advice would be appreciated. I'm keen to use PANDA for my analyses. It looks great.
Sincerely, Paul
Jul 27, 2012 04:07 AM | Zaixu Cui
RE: PANDA not talking to FSL
Dear,
If PANDA failed in the second step, extractB0, for all the
subjects.
Then it may be the problem of
FSL.
Maltab cannot use the command of FSL.
1) Make sure your FSL has been installed correctly.
2) Matlab cannot be open through shortcut. It should be opened with
terminal.
3) Please don't use Ubuntu/Debian version FSL, PANAD cannot work
well with it. Please use Centos version FSL, PANDA work well with
it.
If everything is done, input system('fslroi') in Matlab command
window, the usage of fslroi will display.
If you still have some probelm, please contact me.
Thanks for you interest of PANDA.
Best