open-discussion > Help with failed Split_Crop
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May 6, 2016  03:05 AM | Sheng-Che Hung - Taipei Veterans General Hospital
Help with failed Split_Crop
Hi, 

I am a beginner of PANDA.
I encountered the following message during processing DTI.
Could someone help me?
Besides, could PANDA support TOPUP function of FSL?

Thanks a lot!
Alex

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***************************************************************************

JobName: Split_Crop_00001
Status: failed
***************************************************************************
******************************
Log of the (matlab) job : Split_Crop_00001
Started on 05-May-2016 22:59:29
User: schung
host : Home: Undefined variable.
Sheng-ChedeMac-mini.local
system : unix
******************************
The job starts now !
********************
Home: Undefined variable.
********************
Something went bad ... the job has FAILED !
The last error message occured was :
Error using save
Variable 'VolumeCropped_fileName' not found.
File /Users/schung/matlab/PANDA_1.3.0_64/g_NIIcrop.m at line 133
File /Users/schung/matlab/PANDA_1.3.0_64/psom-1.0.4/psom_run_job.m at line 252
File /Users/schung/matlab/PANDA_1.3.0_64/psom-1.0.4/psom_run_job.m at line 166
****************
Checking outputs
****************
The output file or directory /Users/schung/analysis/disconnection_4DTI/Results/00001/tmp/00001_DWI_01_0000_crop.nii.gz has not been generated!
The output file or directory /Users/schung/analysis/disconnection_4DTI/Results/00001/native_space/data_b0_average_crop.nii.gz has not been generated!
The output file or directory /Users/schung/analysis/disconnection_4DTI/Results/00001/tmp/OutputDone/Split_Crop_00001.done has not been generated!
The output file or directory /Users/schung/analysis/disconnection_4DTI/Results/00001/tmp/NIIcrop_output.mat has not been generated!
***********************************************
05-May-2016 23:00:31 : The job has FAILED
Total time used to process the job : 61.76 sec.
***********************************************
ans =
1
May 7, 2016  02:05 AM | Zaixu Cui
RE: Help with failed Split_Crop
Hi,

Do you use QQ.
My QQ number is 575967039。
My email is zaixucui@gmail.com.

I am trying to solve this problem these days and plan for a new version.
Please contact me, I will give you a new version.

Best
Zaixu
Jul 22, 2016  01:07 PM | Zaixu Cui
RE: Help with failed Split_Crop
Hi,

The new version PANDA 1.3.1 has solved this problem thoroughly.

Please try this version.

Best wishes

Zaixu