Hello PANDA experts,

I have two questions.

1, Using Cluster Locater in PANDA-utilities, I noted that in MATLAB Command Window shows a list of variables, including Voxels MAX, MAX X (vox), MAX Y and MAX Z, as well as COG X, Y and Z. I wonder what the meanings of these variables are.

Voxels MAX: is this the (1-p-value) of the peak voxel within the cluster?
MAX X, Y and Z: are these the MNI coordinates of that peak voxel?
COG X, Y and Z: what are those?

2, To use the fully corrected p image (i.e. tbss_tfce_corrp_tstat) to generate a report on the suprathreshold clusters, should I firstly threshold this p image by value>0.95, and then use PANDA-utilities-Cluster Locater to get the information on the clusters?

Many thanks!

Haobo Zhang

Dear Haobo,

1. This is displayed by the cluster command of FSL, you can look up for the manual about this command https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Cluster.

2. If you use PANDA to display the significant results, a file named *_SigIndex.nii.gz will be created, you can use this file as the input.

Best wishes 

Zaixu