Dear all, 

I'm writing to ask a question about my data. I have two acquisition in resting state fMRI for each subject: one pre-treatment and one post-treatment.

I have reoriented the T1 and rs-fMRI images for each subject's condition. Then in CONN setup I set the number of subjects and the number of session (2) together with the TR. After that, I selected the T1s and rs-fMRIs and setup the two conditions (pre and post).

After running the first preprocessing step I obtained these images that I attach here.

What's wrong with all the images?

Any help would be very appreciated.

Best,

Beatrice