help
help > RE: Problem loading ROI images
Jun 20, 2014 07:06 AM | Alfonso Nieto-Castanon - Boston University
RE: Problem loading ROI images
Hi Yusuf,
I believe this error and warnings might be indicative of some problems with your SPM or CONN folders specified in the Matlab path. I would suggest to check your Matlab path (in the matlab command window, File->Set path) and make sure that only one SPM version appears there (e.g. if there are any references there to SPM5 folders simply remove them from the path), and similarly that only one CONN folder appears there as well. Save the new path, then restart matlab (check that the path changes if any are still there) and try again. If you still get the same error (or you did not see any issues with the paths to begin with), try starting SPM (type SPM fmri in the Matlab command window) before starting conn.
Let me know if any of this seems to fix this issue.
Alfonso
Originally posted by Yusuf Daniju:
I believe this error and warnings might be indicative of some problems with your SPM or CONN folders specified in the Matlab path. I would suggest to check your Matlab path (in the matlab command window, File->Set path) and make sure that only one SPM version appears there (e.g. if there are any references there to SPM5 folders simply remove them from the path), and similarly that only one CONN folder appears there as well. Save the new path, then restart matlab (check that the path changes if any are still there) and try again. If you still get the same error (or you did not see any issues with the paths to begin with), try starting SPM (type SPM fmri in the Matlab command window) before starting conn.
Let me know if any of this seems to fix this issue.
Alfonso
Originally posted by Yusuf Daniju:
Hi all,
Im having some trouble loading the ROI files that are included in the conn filder with the following error:
ERROR DESCRIPTION:
Error using [url=matlab:helpUtils.errorDocCallback('spm_sample_vol')]spm_sample_vol[/url]
Unknown datatype.
Error in spm_get_data (line 44)
Y(i,:) = spm_sample_vol(V(i),XYZ(1,:),XYZ(2,:),XYZ(3,:),0);
Error in conn>conn_spm_read_vols (line 3903)
x=spm_get_data(v,pinv(v(1).mat)*CONN_gui.refs.canonical.xyz);
Error in conn>conn_menu (line 3658)
else title=permute(conn_spm_read_vols(title),[2,1,3]); end
Error in conn (line 977)
conn_menu('update',CONN_h.menus.m_setup_00{5},CONN_x.Setup.rois.files{nsub}{nrois}{3});
Error in conn_filesearchtool (line 83)
if length(h.callback)>1, feval(h.callback{1},h.callback{2:end},names); else, feval(h.callback{1},names); end
CONN v.14.f
SPM8 + Anatomy Beamforming DEM FieldMap MEEGtools conn marsbar
Matlab v.2014a
Warning: ._conn.m overloaded by version in folder
Warning: ._conn_ROI2dl.m overloaded by version in folder
Warning: ._conn_batch.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset_Analyses.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset_Preprocessing.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset_Results.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset_Setup.m overloaded by version in folder
Warning: ._conn_batchexample_group.m overloaded by version in folder
Warning: ._conn_batchexample_nyu.m overloaded by version in folder
Warning: ._conn_batchexample_singlesubject.m overloaded by version in folder
Warning: ._conn_batchexample_singlesubject_nopreprocessing.m overloaded by version in folder
Warning: ._conn_batchexample_sw.m overloaded by version in folder
Warning: ._conn_bsxfun.m overloaded by version in folder
Warning: ._conn_calculator.m overloaded by version in folder
Warning: ._conn_checkFSfiles.m overloaded by version in folder
Warning: ._conn_checkdistributionfiles.m overloaded by version in folder
Warning: ._conn_checkfiles.m overloaded by version in folder
Warning: ._conn_clusters.m overloaded by version in folder
Warning: ._conn_conditionnames.m overloaded by version in folder
Warning: ._conn_contrasthelp.m overloaded by version in folder
Warning: ._conn_contrastmanager.m overloaded by version in folder
Warning: ._conn_conv.m overloaded by version in folder
Warning: ._conn_convertcondition2covariate.m overloaded by version in folder
Warning: ._conn_convertcoordinates.m overloaded by version in folder
Warning: ._conn_convertl12l2covariate.m overloaded by version in folder
Warning: ._conn_create_vol.m overloaded by version in folder
Warning: ._conn_definelabels.m overloaded by version in folder
Warning: ._conn_deriv.m overloaded by version in folder
Warning: ._conn_designmatrix.m overloaded by version in folder
Warning: ._conn_dir.m overloaded by version in folder
Warning: ._conn_display.m overloaded by version in folder
Warning: ._conn_displaynetwork.m overloaded by version in folder
Warning: ._conn_displayroi.m overloaded by version in folder
Warning: ._conn_est_smoothness.m overloaded by version in folder
Warning: ._conn_existfile.m overloaded by version in folder
Warning: ._conn_exportlist.m overloaded by version in folder
Warning: ._conn_exporttable.m overloaded by version in folder
Warning: ._conn_fdr.m overloaded by version in folder
Warning: ._conn_file.m overloaded by version in folder
Warning: ._conn_filesearchtool.m overloaded by version in folder
Warning: ._conn_filter.m overloaded by version in folder
Warning: ._conn_fullfile.m overloaded by version in folder
Warning: ._conn_get_data.m overloaded by version in folder
Warning: ._conn_get_slice.m overloaded by version in folder
Warning: ._conn_get_time.m overloaded by version in folder
Warning: ._conn_get_volume.m overloaded by version in folder
Warning: ._conn_get_voxel.m overloaded by version in folder
Warning: ._conn_getinfo.m overloaded by version in folder
Warning: ._conn_glm.m overloaded by version in folder
Warning: ._conn_glmunivariate.m overloaded by version in folder
Warning: ._conn_hanning.m overloaded by version in folder
Warning: ._conn_hcnet.m overloaded by version in folder
Warning: ._conn_hdr.m overloaded by version in folder
Warning: ._conn_importaseg.m overloaded by version in folder
Warning: ._conn_importl2covariate.m overloaded by version in folder
Warning: ._conn_importspm.m overloaded by version in folder
Warning: ._conn_init_vol.m overloaded by version in folder
Warning: ._conn_matc2nii.m overloaded by version in folder
Warning: ._conn_menumanager.m overloaded by version in folder
Warning: ._conn_merge.m overloaded by version in folder
Warning: ._conn_mesh_display.m overloaded by version in folder
Warning: ._conn_mgh2nii.m overloaded by version in folder
Warning: ._conn_nan.m overloaded by version in folder
Warning: ._conn_network.m overloaded by version in folder
Warning: ._conn_network_centrality.m overloaded by version in folder
Warning: ._conn_network_clustering.m overloaded by version in folder
Warning: ._conn_network_degree.m overloaded by version in folder
Warning: ._conn_network_efficiency.m overloaded by version in folder
Warning: ._conn_network_measures.m overloaded by version in folder
Warning: ._conn_network_mindist.m overloaded by version in folder
Warning: ._conn_network_results.m overloaded by version in folder
Warning: ._conn_obj_coords2.m overloaded by version in folder
Warning: ._conn_peaks.m overloaded by version in folder
Warning: ._conn_prepend.m overloaded by version in folder
Warning: ._conn_print.m overloaded by version in folder
Warning: ._conn_process.m overloaded by version in folder
Warning: ._conn_randomise.m overloaded by version in folder
Warning: ._conn_register.m overloaded by version in folder
Warning: ._conn_reslice.m overloaded by version in folder
Warning: ._conn_resultsfolder.m overloaded by version in folder
Warning: ._conn_rex.m overloaded by version in folder
Warning: ._conn_setup_preproc.m overloaded by version in folder
Warning: ._conn_setup_wizard.m overloaded by version in folder
Warning: ._conn_sourcenames.m overloaded by version in folder
Warning: ._conn_surf_dims.m overloaded by version in folder
Warning: ._conn_surf_display.m overloaded by version in folder
Warning: ._conn_surf_extract.m overloaded by version in folder
Warning: ._conn_surf_project.m overloaded by version in folder
Warning: ._conn_surf_readsurf.m overloaded by version in folder
Warning: ._conn_surf_readsurfresampled.m overloaded by version in folder
Warning: ._conn_surf_results.m overloaded by version in folder
Warning: ._conn_surf_sphere.m overloaded by version in folder
Warning: ._conn_surf_volume.m overloaded by version in folder
Warning: ._conn_tcdf.m overloaded by version in folder
Warning: ._conn_timedwaitbar.m overloaded by version in folder
Warning: ._conn_unsmoothedvolumes.m overloaded by version in folder
Warning: ._conn_update.m overloaded by version in folder
Warning: ._conn_updatefilepaths.m overloaded by version in folder
Warning: ._conn_updatefolders.m overloaded by version in folder
Warning: ._conn_v2v.m overloaded by version in folder
Warning: ._conn_vol.m overloaded by version in folder
Warning: ._conn_vproject.m overloaded by version in folder
Warning: ._conn_watershed.m overloaded by version in folder
Warning: ._conn_wdemean.m overloaded by version in folder
Warning: ._conn_withinbetweenROItest.m overloaded by version in folder
Warning: ._conn_write_combine.m overloaded by version in folder
Warning: ._conn_write_slice.m overloaded by version in folder
Warning: ._conn_write_time.m overloaded by version in folder
Warning: ._conn_write_vol.m overloaded by version in folder
Warning: ._conn_write_voxel.m overloaded by version in folder
Warning: ._rex.m overloaded by version in folder
I also get the following warning when I start the Conn toolbox:
Warning: QFORM0 representation has been rounded.
> In @nifti/private/encode_qform0 at 27
In @nifti/private/mayo2nifti1 at 59
In nifti.nifti at 31
In spm_vol_nifti at 16
In spm_vol>subfunc at 124
In spm_vol>subfunc1 at 77
In spm_vol>subfunc2 at 69
In spm_vol at 54
In conn_getinfo at 10
In conn at 357
In conn at 25
Thanks
Im having some trouble loading the ROI files that are included in the conn filder with the following error:
ERROR DESCRIPTION:
Error using [url=matlab:helpUtils.errorDocCallback('spm_sample_vol')]spm_sample_vol[/url]
Unknown datatype.
Error in spm_get_data (line 44)
Y(i,:) = spm_sample_vol(V(i),XYZ(1,:),XYZ(2,:),XYZ(3,:),0);
Error in conn>conn_spm_read_vols (line 3903)
x=spm_get_data(v,pinv(v(1).mat)*CONN_gui.refs.canonical.xyz);
Error in conn>conn_menu (line 3658)
else title=permute(conn_spm_read_vols(title),[2,1,3]); end
Error in conn (line 977)
conn_menu('update',CONN_h.menus.m_setup_00{5},CONN_x.Setup.rois.files{nsub}{nrois}{3});
Error in conn_filesearchtool (line 83)
if length(h.callback)>1, feval(h.callback{1},h.callback{2:end},names); else, feval(h.callback{1},names); end
CONN v.14.f
SPM8 + Anatomy Beamforming DEM FieldMap MEEGtools conn marsbar
Matlab v.2014a
Warning: ._conn.m overloaded by version in folder
Warning: ._conn_ROI2dl.m overloaded by version in folder
Warning: ._conn_batch.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset_Analyses.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset_Preprocessing.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset_Results.m overloaded by version in folder
Warning: ._conn_batchexample_attentiondataset_Setup.m overloaded by version in folder
Warning: ._conn_batchexample_group.m overloaded by version in folder
Warning: ._conn_batchexample_nyu.m overloaded by version in folder
Warning: ._conn_batchexample_singlesubject.m overloaded by version in folder
Warning: ._conn_batchexample_singlesubject_nopreprocessing.m overloaded by version in folder
Warning: ._conn_batchexample_sw.m overloaded by version in folder
Warning: ._conn_bsxfun.m overloaded by version in folder
Warning: ._conn_calculator.m overloaded by version in folder
Warning: ._conn_checkFSfiles.m overloaded by version in folder
Warning: ._conn_checkdistributionfiles.m overloaded by version in folder
Warning: ._conn_checkfiles.m overloaded by version in folder
Warning: ._conn_clusters.m overloaded by version in folder
Warning: ._conn_conditionnames.m overloaded by version in folder
Warning: ._conn_contrasthelp.m overloaded by version in folder
Warning: ._conn_contrastmanager.m overloaded by version in folder
Warning: ._conn_conv.m overloaded by version in folder
Warning: ._conn_convertcondition2covariate.m overloaded by version in folder
Warning: ._conn_convertcoordinates.m overloaded by version in folder
Warning: ._conn_convertl12l2covariate.m overloaded by version in folder
Warning: ._conn_create_vol.m overloaded by version in folder
Warning: ._conn_definelabels.m overloaded by version in folder
Warning: ._conn_deriv.m overloaded by version in folder
Warning: ._conn_designmatrix.m overloaded by version in folder
Warning: ._conn_dir.m overloaded by version in folder
Warning: ._conn_display.m overloaded by version in folder
Warning: ._conn_displaynetwork.m overloaded by version in folder
Warning: ._conn_displayroi.m overloaded by version in folder
Warning: ._conn_est_smoothness.m overloaded by version in folder
Warning: ._conn_existfile.m overloaded by version in folder
Warning: ._conn_exportlist.m overloaded by version in folder
Warning: ._conn_exporttable.m overloaded by version in folder
Warning: ._conn_fdr.m overloaded by version in folder
Warning: ._conn_file.m overloaded by version in folder
Warning: ._conn_filesearchtool.m overloaded by version in folder
Warning: ._conn_filter.m overloaded by version in folder
Warning: ._conn_fullfile.m overloaded by version in folder
Warning: ._conn_get_data.m overloaded by version in folder
Warning: ._conn_get_slice.m overloaded by version in folder
Warning: ._conn_get_time.m overloaded by version in folder
Warning: ._conn_get_volume.m overloaded by version in folder
Warning: ._conn_get_voxel.m overloaded by version in folder
Warning: ._conn_getinfo.m overloaded by version in folder
Warning: ._conn_glm.m overloaded by version in folder
Warning: ._conn_glmunivariate.m overloaded by version in folder
Warning: ._conn_hanning.m overloaded by version in folder
Warning: ._conn_hcnet.m overloaded by version in folder
Warning: ._conn_hdr.m overloaded by version in folder
Warning: ._conn_importaseg.m overloaded by version in folder
Warning: ._conn_importl2covariate.m overloaded by version in folder
Warning: ._conn_importspm.m overloaded by version in folder
Warning: ._conn_init_vol.m overloaded by version in folder
Warning: ._conn_matc2nii.m overloaded by version in folder
Warning: ._conn_menumanager.m overloaded by version in folder
Warning: ._conn_merge.m overloaded by version in folder
Warning: ._conn_mesh_display.m overloaded by version in folder
Warning: ._conn_mgh2nii.m overloaded by version in folder
Warning: ._conn_nan.m overloaded by version in folder
Warning: ._conn_network.m overloaded by version in folder
Warning: ._conn_network_centrality.m overloaded by version in folder
Warning: ._conn_network_clustering.m overloaded by version in folder
Warning: ._conn_network_degree.m overloaded by version in folder
Warning: ._conn_network_efficiency.m overloaded by version in folder
Warning: ._conn_network_measures.m overloaded by version in folder
Warning: ._conn_network_mindist.m overloaded by version in folder
Warning: ._conn_network_results.m overloaded by version in folder
Warning: ._conn_obj_coords2.m overloaded by version in folder
Warning: ._conn_peaks.m overloaded by version in folder
Warning: ._conn_prepend.m overloaded by version in folder
Warning: ._conn_print.m overloaded by version in folder
Warning: ._conn_process.m overloaded by version in folder
Warning: ._conn_randomise.m overloaded by version in folder
Warning: ._conn_register.m overloaded by version in folder
Warning: ._conn_reslice.m overloaded by version in folder
Warning: ._conn_resultsfolder.m overloaded by version in folder
Warning: ._conn_rex.m overloaded by version in folder
Warning: ._conn_setup_preproc.m overloaded by version in folder
Warning: ._conn_setup_wizard.m overloaded by version in folder
Warning: ._conn_sourcenames.m overloaded by version in folder
Warning: ._conn_surf_dims.m overloaded by version in folder
Warning: ._conn_surf_display.m overloaded by version in folder
Warning: ._conn_surf_extract.m overloaded by version in folder
Warning: ._conn_surf_project.m overloaded by version in folder
Warning: ._conn_surf_readsurf.m overloaded by version in folder
Warning: ._conn_surf_readsurfresampled.m overloaded by version in folder
Warning: ._conn_surf_results.m overloaded by version in folder
Warning: ._conn_surf_sphere.m overloaded by version in folder
Warning: ._conn_surf_volume.m overloaded by version in folder
Warning: ._conn_tcdf.m overloaded by version in folder
Warning: ._conn_timedwaitbar.m overloaded by version in folder
Warning: ._conn_unsmoothedvolumes.m overloaded by version in folder
Warning: ._conn_update.m overloaded by version in folder
Warning: ._conn_updatefilepaths.m overloaded by version in folder
Warning: ._conn_updatefolders.m overloaded by version in folder
Warning: ._conn_v2v.m overloaded by version in folder
Warning: ._conn_vol.m overloaded by version in folder
Warning: ._conn_vproject.m overloaded by version in folder
Warning: ._conn_watershed.m overloaded by version in folder
Warning: ._conn_wdemean.m overloaded by version in folder
Warning: ._conn_withinbetweenROItest.m overloaded by version in folder
Warning: ._conn_write_combine.m overloaded by version in folder
Warning: ._conn_write_slice.m overloaded by version in folder
Warning: ._conn_write_time.m overloaded by version in folder
Warning: ._conn_write_vol.m overloaded by version in folder
Warning: ._conn_write_voxel.m overloaded by version in folder
Warning: ._rex.m overloaded by version in folder
I also get the following warning when I start the Conn toolbox:
Warning: QFORM0 representation has been rounded.
> In @nifti/private/encode_qform0 at 27
In @nifti/private/mayo2nifti1 at 59
In nifti.nifti at 31
In spm_vol_nifti at 16
In spm_vol>subfunc at 124
In spm_vol>subfunc1 at 77
In spm_vol>subfunc2 at 69
In spm_vol at 54
In conn_getinfo at 10
In conn at 357
In conn at 25
Thanks
Threaded View
| Title | Author | Date |
|---|---|---|
| Yusuf Daniju | Jun 19, 2014 | |
| Alfonso Nieto-Castanon | Jun 20, 2014 | |
| Yusuf Daniju | Jun 23, 2014 | |
| Alfonso Nieto-Castanon | Jun 23, 2014 | |