open-discussion > failed job: bedpostX_postproc
Jul 9, 2014  02:07 PM | Isabella Radl
failed job: bedpostX_postproc
Dear PANDA-experts, 

i'm having some trouble running PANDA on Ubuntu 12.04 (Matlab R2012b)

It says:

***************************************************************************

JobName: BedpostX_postproc_00044
Status: failed
***************************************************************************
******************************
Log of the (matlab) job : BedpostX_postproc_00044
Started on 09-Jul-2014 15:59:40
User: isabella
host : Niklas
system : unix
******************************
********************
The job starts now !
********************
Usage: fslmerge <-x/y/z/t/a/tr> [tr value in seconds]
-t : concatenate images in time
-x : concatenate images in the x direction
-y : concatenate images in the y direction
-z : concatenate images in the z direction
-a : auto-choose: single slices -> volume, volumes -> 4D (time series)
-tr : concatenate images in time and set the output image tr to the final option value
Usage: fslmerge <-x/y/z/t/a/tr> [tr value in seconds]
-t : concatenate images in time
-x : concatenate images in the x direction
-y : concatenate images in the y direction
-z : concatenate images in the z direction
-a : auto-choose: single slices -> volume, volumes -> 4D (time series)
-tr : concatenate images in time and set the output image tr to the final option value
Usage: fslmerge <-x/y/z/t/a/tr> [tr value in seconds]
-t : concatenate images in time
-x : concatenate images in the x direction
-y : concatenate images in the y direction
-z : concatenate images in the z direction
-a : auto-choose: single slices -> volume, volumes -> 4D (time series)
-tr : concatenate images in time and set the output image tr to the final option value
Cannot open volume /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_th1samples for reading!
Cannot open volume /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_ph1samples for reading!
Cannot open volume /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_f1samples for reading!
Image Exception : #22 :: ERROR: Could not open image /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_th1samples
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted (core dumped)
make_dyadic_vectors /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_th1samples /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_ph1samples /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/nodif_brain_mask /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/dyads1 && touch /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/diff_slices/dyads.done: Aborted
Usage: fslmerge <-x/y/z/t/a/tr> [tr value in seconds]
-t : concatenate images in time
-x : concatenate images in the x direction
-y : concatenate images in the y direction
-z : concatenate images in the z direction
-a : auto-choose: single slices -> volume, volumes -> 4D (time series)
-tr : concatenate images in time and set the output image tr to the final option value
Usage: fslmerge <-x/y/z/t/a/tr> [tr value in seconds]
-t : concatenate images in time
-x : concatenate images in the x direction
-y : concatenate images in the y direction
-z : concatenate images in the z direction
-a : auto-choose: single slices -> volume, volumes -> 4D (time series)
-tr : concatenate images in time and set the output image tr to the final option value
Usage: fslmerge <-x/y/z/t/a/tr> [tr value in seconds]
-t : concatenate images in time
-x : concatenate images in the x direction
-y : concatenate images in the y direction
-z : concatenate images in the z direction
-a : auto-choose: single slices -> volume, volumes -> 4D (time series)
-tr : concatenate images in time and set the output image tr to the final option value
Cannot open volume /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_th2samples for reading!
Cannot open volume /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_ph2samples for reading!
Cannot open volume /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_f2samples for reading!
Image Exception : #22 :: ERROR: Could not open image /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_th2samples
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted (core dumped)
make_dyadic_vectors /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_th2samples /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_ph2samples /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/nodif_brain_mask /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/dyads2 && touch /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/diff_slices/dyads.done: Aborted
****************
Checking outputs
****************
The output file or directory /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS/00044/native_space.bedpostX/BedpostX.done has not been generated!
**********************************************
09-Jul-2014 15:59:47 : The job has FAILED
Total time used to process the job : 6.29 sec.
**********************************************
ans =
1


For me it seems like there is a wrong filename because there are two // after PANDA_RESULTS in the path, so it's clear that PANDA cannot open this volume

Cannot open volume /home/isabella/Documents/UNI/Projects/Diplomarbeit/data/PANDA_RESULTS//00044/native_space.bedpostX/merged_th1samples for reading!

You know any help??
Thanks in advance

Isabella

Threaded View

TitleAuthorDate
failed job: bedpostX_postproc
Isabella Radl Jul 9, 2014
Weiyan Wang Dec 7, 2022
Isabella Radl Jul 9, 2014
Zaixu Cui Jul 13, 2014
Isabella Radl Jul 14, 2014
Zaixu Cui Jul 15, 2014
Tuukka Raij Dec 31, 2014