Hello,

I have question regarding multiple between conditions contrasts using a batch script, is this possible?

We have 3 conditions, A, B, and C.

Here is an example setup:

BATCH.Results.between_subjects.effect_names={'AllSubjects'};
BATCH.Results.between_subjects.contrast=[1];
BATCH.Results.between_conditions.effect_names={'Cond_A','Cond_B','Cond_C'};

For the contrast, Cond_A > Cond_C, I choose the following:

BATCH.Results.between_conditions.contrast=[1,0,-1];

This is correct, no?

If so, is there a way to set up the BATCH.Results.between_conditions.contrast file where 3 contrasts are provided as input:

Cond_A vs Cond_C   [1 0 -1]
Cond_A vs Cond_B    [1 -1 0]
Cond_B vs Cond_C  [0 1 -1]

And the output folder contains 3 subfolders, one for subfolder for each contrast?

Essentially, can we setup the batch to run similar to SPM's contrast manager where you can enter several contrasts as opposed to just one described in the conn toolbox manual?

Thank you,


h.