how_to > RE: HOW TO use the DTI template for registration
Apr 14, 2015  02:04 PM | Lauren Byrne - UCL
RE: HOW TO use the DTI template for registration
Hi Konstantinos,

dti_rigid_reg /home/lauren/Imaging/IITmean_tensor_mask_256_templates/IITmean_tensor_256.nii.gz GW_template.nii.gz EDS 4 4 4 0.01

dti_affine_reg /home/lauren/Imaging/IITmean_tensor_mask_256_templates/IITmean_tensor_256.nii.gz GW_template.nii.gz EDS 4 4 4 0.01 1

dti_diffeomorphic_reg /home/lauren/Imaging/IITmean_tensor_mask_256_templates/IITmean_tensor_256.nii.gz GW_template_aff.nii.gz /home/lauren/Imaging/IITmean_tensor_mask_256_templates/IITmean_tensor_mask_256.nii.gz 1 5 0.002

These are the commands I've used. I know that the IIT atlas has significantly bigger dimensions compared to my GW template. Would that be a problem?
I've attached the FA map for the GW template after being registered to the IIT space.

Thanks,
Lauren
Attachment: GW_template_aff_diffeo_fa.nii.gz
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Konstantinos Arfanakis Jun 6, 2013
magan Feb 13, 2018
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Lauren Byrne Apr 10, 2015
Konstantinos Arfanakis Apr 10, 2015
RE: HOW TO use the DTI template for registration
 Lauren Byrne Apr 14, 2015
Konstantinos Arfanakis Apr 22, 2015
Lauren Byrne May 11, 2015
Konstantinos Arfanakis May 13, 2015
Lauren Byrne May 14, 2015
Konstantinos Arfanakis May 14, 2015
Lauren Byrne May 15, 2015
Lauren Byrne May 11, 2015
Lauren Byrne Apr 24, 2015
Marcus heldmann May 27, 2014
Konstantinos Arfanakis May 28, 2014
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