how_to > RE: HOW TO use the DTI template for registration
Apr 14, 2015  07:04 AM | Lauren Byrne - UCL
RE: HOW TO use the DTI template for registration
Hi Konstantinos,

dti_rigid_reg /home/lauren/Imaging/IITmean_tensor_mask_256_templates/IITmean_tensor_256.nii.gz GW_template.nii.gz EDS 4 4 4 0.01

dti_affine_reg /home/lauren/Imaging/IITmean_tensor_mask_256_templates/IITmean_tensor_256.nii.gz GW_template.nii.gz EDS 4 4 4 0.01 1

dti_diffeomorphic_reg /home/lauren/Imaging/IITmean_tensor_mask_256_templates/IITmean_tensor_256.nii.gz GW_template_aff.nii.gz /home/lauren/Imaging/IITmean_tensor_mask_256_templates/IITmean_tensor_mask_256.nii.gz 1 5 0.002

These are the commands I've used. I know that the IIT atlas has significantly bigger dimensions compared to my GW template. Would that be a problem?
I've attached the FA map for the GW template after being registered to the IIT space.

Thanks,
Lauren

Threaded View

TitleAuthorDate
Konstantinos Arfanakis Jun 5, 2013
magan Feb 13, 2018
Konstantinos Arfanakis Feb 14, 2018
magan Feb 15, 2018
Rowena C Oct 16, 2015
Konstantinos Arfanakis Oct 16, 2015
Rowena Chin Oct 20, 2015
Konstantinos Arfanakis Oct 21, 2015
Rowena C Jan 19, 2016
Konstantinos Arfanakis Jan 20, 2016
Lauren Byrne Mar 31, 2015
Lauren Byrne Mar 26, 2015
Konstantinos Arfanakis Mar 30, 2015
Lauren Byrne Mar 31, 2015
Lauren Byrne Mar 31, 2015
Konstantinos Arfanakis Apr 2, 2015
Lauren Byrne Apr 10, 2015
Konstantinos Arfanakis Apr 10, 2015
RE: HOW TO use the DTI template for registration
Lauren Byrne Apr 14, 2015
Konstantinos Arfanakis Apr 22, 2015
Lauren Byrne May 11, 2015
Konstantinos Arfanakis May 13, 2015
Lauren Byrne May 14, 2015
Konstantinos Arfanakis May 14, 2015
Lauren Byrne May 15, 2015
Lauren Byrne May 11, 2015
Lauren Byrne Apr 24, 2015
Marcus heldmann May 27, 2014
Konstantinos Arfanakis May 28, 2014
Konstantinos Arfanakis Aug 10, 2013
Sean Hatton Jan 1, 2014
Konstantinos Arfanakis Jan 3, 2014