how_to > RE: HOW TO use the DTI template for registration
Oct 16, 2015  07:10 AM | Rowena C - UCL
RE: HOW TO use the DTI template for registration
Dear Konstantinos and others:

Like the others who have commented before myself, I am trying to use the IIT template in DTI-TK. I have read the guide on "How to spatially normalize individual DTI data to the IIT HUman Brain Atlas Using DTI-TK". I assume this is more for those who want to do the registration to the IIT template and not in the case whereby one has generated the population-specific atlas and is trying to register that to the IIT template. I have a few questions:

1. Referring to the guide provided, I assume one has to already perform the bootstrap before the suggested rigid alignment steps. Prior to this, if I preprocessed my data using FSL, I would have also used the script fsl_to_dtitk (http://dti-tk.sourceforge.net/pmwiki/pmw...). I assume these steps are compatible with the later steps in the analysis as suggested in the guide?

2. I am also trying to integrate TBSS with DTI-TK, to perform group wise analyses. In this case, after I have completed Step 7 (combining affine and diffeomorphic transformation), how would I then integrate the output with TBSS? In DTI-TK, there is a integration pipeline (http://dti-tk.sourceforge.net/pmwiki/pmw...). Are these steps still relevant, or is there a way to smoothly proceed on to do the TBSS analysis?

Thanks very much.
Rowena

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TitleAuthorDate
Konstantinos Arfanakis Jun 5, 2013
magan Feb 13, 2018
Konstantinos Arfanakis Feb 14, 2018
magan Feb 15, 2018
RE: HOW TO use the DTI template for registration
Rowena C Oct 16, 2015
Konstantinos Arfanakis Oct 16, 2015
Rowena Chin Oct 20, 2015
Konstantinos Arfanakis Oct 21, 2015
Rowena C Jan 19, 2016
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Lauren Byrne Mar 31, 2015
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