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help > RE: BATCH Analysis
Jun 30, 2016 09:06 PM | Alfonso Nieto-Castanon - Boston University
RE: BATCH Analysis
Hi Bob,
Yes, we are working on a couple of modifications to the batch structure tree to avoid this sort of ambiguities/complications. Currently if your batch.Analysis structure contains a field named 'measures' it indicates that this is a voxel-to-voxel analyses, while if it contains a field named 'sources' that indicates that this is a seed-to-voxel or ROI-to-ROI analysis. If you want to run both seed-to-voxel/ROI-to-ROI as well as voxel-to-voxel analyses within the same conn_batch command you can do that by creating a cell array of batch structures (e.g. batch{1}.Analysis containing the seed-to-voxel/ROI-to-ROI analyses and batch{2}.Analysis containing the voxel-to-voxel analyses; see for example this post https://www.nitrc.org/forum/message.php?... for additional details).
Hope this helps
Alfonso
Originally posted by Bob Kraft:
Yes, we are working on a couple of modifications to the batch structure tree to avoid this sort of ambiguities/complications. Currently if your batch.Analysis structure contains a field named 'measures' it indicates that this is a voxel-to-voxel analyses, while if it contains a field named 'sources' that indicates that this is a seed-to-voxel or ROI-to-ROI analysis. If you want to run both seed-to-voxel/ROI-to-ROI as well as voxel-to-voxel analyses within the same conn_batch command you can do that by creating a cell array of batch structures (e.g. batch{1}.Analysis containing the seed-to-voxel/ROI-to-ROI analyses and batch{2}.Analysis containing the voxel-to-voxel analyses; see for example this post https://www.nitrc.org/forum/message.php?... for additional details).
Hope this helps
Alfonso
Originally posted by Bob Kraft:
I would like to setup the First Level Analysis
to perform ROI-to-ROI, seed-to-voxel, and voxel-to-voxel
analysis. I am able to do the first two but not
voxel-to-voxel. After looking at the conn_batch.m help it
appears that the voxel-to-voxel analysis is using the same fields
as the ROI-to-ROI and seed-to-voxel. Please let me know what
I am missing.
Thanks for your help in advance.
Bob
Excerpts from conn_batch.m is below.
% BATCH.Analysis PERFORMS FIRST-LEVEL ANALYSES (ROI-to-ROI and seed-to-voxel) %!
% Analysis
%
% done : 1/0: 0 defines fields only; 1 runs ANALYSIS processing steps [0]
% overwrite : (for done=1) 1/0: overwrites target files if they exist [1]
%
% BATCH.Analysis PERFORMS FIRST-LEVEL ANALYSES (voxel-to-voxel) %!
% Analysis
%
% done : 1/0: 0 defines fields only; 1 runs ANALYSIS processing steps [0]
% overwrite : (for done=1) 1/0: overwrites target files if they exist [1]
% measures : Cell array of voxel-to-voxel measure names (type 'conn_v2v measurenames' for a list of default measures) (if this variable does not exist the toolbox will perform the an\
alyses for all of the default voxel-to-voxel measures)
Thanks for your help in advance.
Bob
Excerpts from conn_batch.m is below.
% BATCH.Analysis PERFORMS FIRST-LEVEL ANALYSES (ROI-to-ROI and seed-to-voxel) %!
% Analysis
%
% done : 1/0: 0 defines fields only; 1 runs ANALYSIS processing steps [0]
% overwrite : (for done=1) 1/0: overwrites target files if they exist [1]
%
% BATCH.Analysis PERFORMS FIRST-LEVEL ANALYSES (voxel-to-voxel) %!
% Analysis
%
% done : 1/0: 0 defines fields only; 1 runs ANALYSIS processing steps [0]
% overwrite : (for done=1) 1/0: overwrites target files if they exist [1]
% measures : Cell array of voxel-to-voxel measure names (type 'conn_v2v measurenames' for a list of default measures) (if this variable does not exist the toolbox will perform the an\
alyses for all of the default voxel-to-voxel measures)
Threaded View
| Title | Author | Date |
|---|---|---|
| Bob Kraft | Jun 30, 2016 | |
| Alfonso Nieto-Castanon | Jun 30, 2016 | |