open-discussion > RE: slice timing information
Dec 17, 2009  06:12 PM | Daniel Glen
RE: slice timing information
Thanks for the information. That will definitely help. I still find 147 3T datasets with TR of 1 second. A few other sites seem to have that TR also including Ann Arbor a and b and Berlin (Schmidt). This is the updated version of my script for checking the sites. I've attached the site list with TR of 1 and the corresponding subjects.

#!/bin/tcsh
# findTR1.csh
set tr1_dsets = 0

foreach rd (rest*.nii.gz)
nifti_tool -disp_hdr -infile_spec $rd |grep pixdim |grep "1.0 0.0 0.0" \
>& /dev/null
if ( ! $status ) then
echo "$rd has TR=1"
# strip off "rest_" and ".nii.gz" from name
set sub = `echo $rd | awk -F '.' '{print $1 }' | awk -F "_" '{print $2}'`
# check from which site this subject came
grep $sub *subjects.txt
@ tr1_dsets++
endif
end
echo ""
echo "Found $tr1_dsets with a TR of 1"
Attachment: TR1_sites.txt

Threaded View

TitleAuthorDate
Daniel Glen Dec 14, 2009
Maarten Mennes Dec 15, 2009
Daniel Glen Dec 16, 2009
Xi-Nian Zuo Dec 16, 2009
Daniel Glen Dec 16, 2009
Lisa Kilpatrick Jan 26, 2010
Michael Milham Feb 1, 2010
Yunxia Tong Feb 2, 2010
Michel Grothe Feb 4, 2010
Maarten Mennes Feb 6, 2010
Michael Milham Feb 9, 2010
Sheng Zhang Mar 17, 2010
Maarten Mennes Mar 24, 2010
Alok Deshpande Jul 30, 2010
Michael Milham Aug 3, 2010
Alok Deshpande Aug 13, 2010
Michael Milham Feb 3, 2010
Michael Milham Jan 28, 2010
Michael Milham Dec 17, 2009
RE: slice timing information
Daniel Glen Dec 17, 2009