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help > Error Reading ROI files in CONN
Oct 14, 2016 05:10 PM | Emmaly Owens
Error Reading ROI files in CONN
Hello,
I am new to using the CONN toolbox. I completed the setup step and selected "done' to complete setup and move on to denoising. I have tried finalizing the setup step for one, two, and all of my subjects. But each time, although it appears that the setup is initializing correctly at first, I receive the following error message about the ROI.mat file created by CONN for whichever is the last subject in the series (e.g., if I only try to finalize setup for subject 001, then I will receive this error message about subject 002's roi.mat file, even though I didn't tell the toolbox to finalize setup for subject 002; see error below):
Error using load
Unable to read file E:\filepathname\CONNProjectName\data\ROI_Subject002_Session001.mat: No such file or directory.
Error in conn_process (line 822)
load(filename,'names');
Error in conn_process (line 14)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 2999)
else conn_process('setup');
Error in conn_menumanager (line 119)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});"
Obviously this is an error with MATLAB not finding the file it expects. When I looked in the data folder of my CONN project to make sure the ROI.mat file specified above is in fact where it should be, I realized that this is a .mat file that is generated by the toolbox AFTER I have selected "done" to finish setup. So without the setup process finishing (due to the error message), the "ROI_Subject_Session.mat" file does not in fact exist, hence the error message. Essentially then, this seems like a circular problem, and I don't understand why the setup step is looking for a ROI.mat file that should be created during the setup step, and why this is causing my setup to crash out before it can create the roi.mat file for the subject. Any advice about why this is occurring or what I'm doing wrong would be greatly appreciated!
Best,
Emmaly
I am new to using the CONN toolbox. I completed the setup step and selected "done' to complete setup and move on to denoising. I have tried finalizing the setup step for one, two, and all of my subjects. But each time, although it appears that the setup is initializing correctly at first, I receive the following error message about the ROI.mat file created by CONN for whichever is the last subject in the series (e.g., if I only try to finalize setup for subject 001, then I will receive this error message about subject 002's roi.mat file, even though I didn't tell the toolbox to finalize setup for subject 002; see error below):
Error using load
Unable to read file E:\filepathname\CONNProjectName\data\ROI_Subject002_Session001.mat: No such file or directory.
Error in conn_process (line 822)
load(filename,'names');
Error in conn_process (line 14)
case 'setup', disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 2999)
else conn_process('setup');
Error in conn_menumanager (line 119)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});"
Obviously this is an error with MATLAB not finding the file it expects. When I looked in the data folder of my CONN project to make sure the ROI.mat file specified above is in fact where it should be, I realized that this is a .mat file that is generated by the toolbox AFTER I have selected "done" to finish setup. So without the setup process finishing (due to the error message), the "ROI_Subject_Session.mat" file does not in fact exist, hence the error message. Essentially then, this seems like a circular problem, and I don't understand why the setup step is looking for a ROI.mat file that should be created during the setup step, and why this is causing my setup to crash out before it can create the roi.mat file for the subject. Any advice about why this is occurring or what I'm doing wrong would be greatly appreciated!
Best,
Emmaly
Threaded View
| Title | Author | Date |
|---|---|---|
| Emmaly Owens | Oct 14, 2016 | |
| Alfonso Nieto-Castanon | Oct 17, 2016 | |
| Emmaly Owens | Oct 17, 2016 | |
| Jeff Browndyke | Oct 17, 2016 | |
