open-discussion
open-discussion > RE: Including CompCor(CONN toolbox) into SPM batch
Mar 1, 2019 09:03 AM | Ralf Veit
RE: Including CompCor(CONN toolbox) into SPM batch
Dear Lars,
I downloaded your development version (tapas version is R2018.2.0) and now there is an example file tapas_physio_example_philips_ecg3t_spm_job.m. After modification of the file according to your suggestions, the error is still the same
Running 'TAPAS PhysIO Toolbox'
Failed 'TAPAS PhysIO Toolbox'
Error using textread (line 165)
File not found.
and I have again different errors using different vendors. There is no option to unmark vendor. Thereafter I tried the following in the script
matlabbatch{1}.spm.tools.physio.log_files.vendor = {''};
but the program stopped
SWITCH expression must be a scalar or character vector constant and refered to tapas_physio_fill_empty_parameters.m
I am using spm12 (v7129) with matlab 2016b. I have one more question regarding your batch you provided in your response to Sara. There seems to be only one file in the fmri time series option (wuafmri01.nii). Why not the whole series?
I have attached the spm batch file.
Best
Ralf
I downloaded your development version (tapas version is R2018.2.0) and now there is an example file tapas_physio_example_philips_ecg3t_spm_job.m. After modification of the file according to your suggestions, the error is still the same
Running 'TAPAS PhysIO Toolbox'
Failed 'TAPAS PhysIO Toolbox'
Error using textread (line 165)
File not found.
and I have again different errors using different vendors. There is no option to unmark vendor. Thereafter I tried the following in the script
matlabbatch{1}.spm.tools.physio.log_files.vendor = {''};
but the program stopped
SWITCH expression must be a scalar or character vector constant and refered to tapas_physio_fill_empty_parameters.m
I am using spm12 (v7129) with matlab 2016b. I have one more question regarding your batch you provided in your response to Sara. There seems to be only one file in the fmri time series option (wuafmri01.nii). Why not the whole series?
I have attached the spm batch file.
Best
Ralf
Threaded View
Title | Author | Date |
---|---|---|
Sara Calzolari | Jan 30, 2019 | |
Lars Kasper | Jan 31, 2019 | |
Sara Calzolari | Feb 11, 2019 | |
Lars Kasper | Feb 13, 2019 | |
Ralf Veit | Feb 28, 2019 | |
Lars Kasper | Feb 28, 2019 | |
Ralf Veit | Mar 1, 2019 | |
Lars Kasper | Mar 1, 2019 | |
Ralf Veit | Mar 1, 2019 | |
Lars Kasper | Mar 1, 2019 | |
Ralf Veit | Mar 4, 2019 | |
Ralf Veit | Mar 5, 2019 | |
Lars Kasper | Mar 5, 2019 | |
Ralf Veit | Mar 5, 2019 | |
Lars Kasper | Mar 9, 2019 | |
Ralf Veit | Mar 11, 2019 | |