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help > connectivity matrices, SCM in ART and denoising error help
Jun 3, 2019 03:06 PM | Kulpreet Cheema - University of Alberta
connectivity matrices, SCM in ART and denoising error help
Hello Alfonso,
Thank you for the wonderful workshop in Boston, it was really informative and helpful!
I have few questions that I need some help with:
Invalid file identifier. Use fopen to generate a valid file identifier.
Error in conn_get_slice (line 16)
fseek(handle,4*sum(V.size.Nv(1:slice-1))*V.size.Nt,-1);
Error in conn_process (line 1682)
[y,idx]=conn_get_slice(Y,slice);
Error in conn_process (line 30)
case {'preprocessing_gui','denoising_gui'}, conn_disp(['CONN: RUNNING DENOISING STEP']); conn_process([1.5,2,6:9],varargin{:});
Error in conn (line 5907)
else conn_process('denoising_gui'); ispending=false;
Error in conn_menumanager (line 120)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
3. I have a question regarding the ART toolbox. Is there a way to analyze between-group differences in stimulus-correlated motion (SCM)? I only know how to look for stimulus-correlated motion at individual level, but how do I analyze it at group level and compare the 2 groups on the amount of SCM? I posted my question in the ART toolbox forum but didn't get any response. Hopefully, you will know the answer.
Thanks again!
Thank you for the wonderful workshop in Boston, it was really informative and helpful!
I have few questions that I need some help with:
- As we discussed, there was one reviewer who wanted connectivity matrices (like the one in the file attached) for the ROI-to-ROI analyses, can you let me know the matlab code on how to get these connectivity matrices?
- I am getting the following error everytime I run the denoising step. It stops at a specific subject during Step 5/6- preprocessing voxel to voxel covariance. I have checked the space on the USB drive and there is about 1.3 TB on it and my Mac has 16GB of RAM (so I don't think it's an issue of space). Do you know what it is about?
Invalid file identifier. Use fopen to generate a valid file identifier.
Error in conn_get_slice (line 16)
fseek(handle,4*sum(V.size.Nv(1:slice-1))*V.size.Nt,-1);
Error in conn_process (line 1682)
[y,idx]=conn_get_slice(Y,slice);
Error in conn_process (line 30)
case {'preprocessing_gui','denoising_gui'}, conn_disp(['CONN: RUNNING DENOISING STEP']); conn_process([1.5,2,6:9],varargin{:});
Error in conn (line 5907)
else conn_process('denoising_gui'); ispending=false;
Error in conn_menumanager (line 120)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
3. I have a question regarding the ART toolbox. Is there a way to analyze between-group differences in stimulus-correlated motion (SCM)? I only know how to look for stimulus-correlated motion at individual level, but how do I analyze it at group level and compare the 2 groups on the amount of SCM? I posted my question in the ART toolbox forum but didn't get any response. Hopefully, you will know the answer.
Thanks again!
