Hi all,

I have a single subject data(T1w and rs-fMRI BOLD). I am wanting to generate functional connecitivty matrix after preprocessing the raw fMRI. I already used CONN toolbox to do the entire preprocessing. I have now completed the first-level analysis as well. 

Since I am wanting to calculate FC matrix, I have computed ROI-to-ROI connectivty during first-level analysis. I belieive this is the correct way forward. I am having the output file named "resultsROI_Subject###_Condition###.mat". Can someone please show me how to compute FC matrix values using this file.