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help > RE: Single Subject Pre/Post Analysis Options?
Oct 23, 2019 06:10 PM | Jeff Browndyke
RE: Single Subject Pre/Post Analysis Options?
You are observing the same thing that I saw in my data, and I
believe the issue is the lack of any cluster-based threshold.
I believe the pFDR is voxel-wise only.
To address this, I found Simon Eckhoff's SPM ANATOMY toolbox helpful. With this toolbox, one can select the pFDR thresholded "neg" or "pos" beta difference maps and then apply a cluster extent. Albeit this cluster extent is arbitrary and limited to voxel count alone, you can at least make a large cluster threshold to minimize Type II error (e.g., I went with voxel pFDR<0.001 and k > 200 in my data). Note, if you use the Anatomy toolbox, you will need to apply a "-1" multiplicative transform to visualize the "neg" beta difference map blobs.
Hope this helps,
Jeff
To address this, I found Simon Eckhoff's SPM ANATOMY toolbox helpful. With this toolbox, one can select the pFDR thresholded "neg" or "pos" beta difference maps and then apply a cluster extent. Albeit this cluster extent is arbitrary and limited to voxel count alone, you can at least make a large cluster threshold to minimize Type II error (e.g., I went with voxel pFDR<0.001 and k > 200 in my data). Note, if you use the Anatomy toolbox, you will need to apply a "-1" multiplicative transform to visualize the "neg" beta difference map blobs.
Hope this helps,
Jeff
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Title | Author | Date |
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Jeff Browndyke | Aug 7, 2019 | |
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