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help > RE: Hanging on Step 5/7 Importing ROI data
Feb 4, 2020 09:02 AM | Alfonso Nieto-Castanon - Boston University
RE: Hanging on Step 5/7 Importing ROI data
Hi Joshua
Yes, importing ROI data can take a long time (mostly while computing PCA of the BOLD signal within white/CSF noise masks) particularly if your functional runs are relatively large files and are located in an external or network drive. Just wait for it to finish and/or parallelize/distribute it across multiple computers and/or move your data to a local hard drive (ideally a SSD drive for considerably faster performance)
Best
Alfonso
Originally posted by Joshua Bear:
Yes, importing ROI data can take a long time (mostly while computing PCA of the BOLD signal within white/CSF noise masks) particularly if your functional runs are relatively large files and are located in an external or network drive. Just wait for it to finish and/or parallelize/distribute it across multiple computers and/or move your data to a local hard drive (ideally a SSD drive for considerably faster performance)
Best
Alfonso
Originally posted by Joshua Bear:
I've tried running the standard preprocessing
pipeline now twice on my data of 32 subjects with resting state
scans of up to 30 minutes. I received a message both times that it
had successfully completed the preprocessing, but when I click
"done" to go to the next step it starts the import process. It
seems to have no problem with the initial steps (1: data
completeness; 2: segmentation; 3: import conditions/covariates; 4:
import functional data), but when it gets to step 5 (importing ROI
data), it just seems to hang. Step 4 actually took quite a long
time, but it gave me a status bar telling me which subject was
being imported, and I could find the file that was being slowly
written during the import. With Step 5, I am not getting any sort
of update on which subject it is working on, and even after waiting
a few hours I cannot find any files that have been created or
edited since the step began.
I'm running Matlab 2019 R2019b with Conn 18b.
Does the import ROI just take a really really long time and I should just wait? Or might there be some undetected error that is causing it to hang?
Thank you,
Josh
I'm running Matlab 2019 R2019b with Conn 18b.
Does the import ROI just take a really really long time and I should just wait? Or might there be some undetected error that is causing it to hang?
Thank you,
Josh
Threaded View
| Title | Author | Date |
|---|---|---|
| Joshua Bear | Feb 3, 2020 | |
| Alfonso Nieto-Castanon | Feb 4, 2020 | |
| Joshua Bear | Feb 3, 2020 | |
| Abdullah BAS | Feb 4, 2020 | |
| Joshua Bear | Feb 3, 2020 | |
| Abdullah BAS | Feb 3, 2020 | |
