help > Can't reach Denoising step w/ conn-v19.c
Jun 9, 2020  08:06 PM | Jeremy Cohen
Can't reach Denoising step w/ conn-v19.c
Dear Alphonso,

I am processing a 14 subjet dataset to perform dynamic ICA analyses. Preprocessing runs smoothly. However, every time I click 'Done' to move on to the Denoising step, I encounter this error:

ERROR DESCRIPTION:

Error using conn_process (line 760)
No suprathreshold voxels in ROI file /Users/jeremycohen/Desktop/users/projects/meditation_dynamicICA/BIDS_meditation/sub-14/ses-1/anat/wc3csub-14_coT1w.nii after erosion (original file contained 3404 suprathreshold voxels)
Error in conn_process (line 16)
case 'setup', conn_disp(['CONN: RUNNING SETUP STEP']); conn_process([0:4,4.5,5]);
Error in conn (line 5495)
else conn_process(processname); ispending=false;
Error in conn_menumanager (line 120)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN19.c
SPM12 + DAiSS DEM FieldMap MEEGtools
Matlab v.2019b
project: CONN19.c
storage: 2479.8Gb available
spm @ /Users/jeremycohen/Desktop/Matlab-Tulane/spm12
conn @ /Users/jeremycohen/Desktop/Matlab-Tulane/conn

The trouble seems to be with a CSF segmentation file. Moreover, this error initially kept occurring on subject 7 (ironically while the program displayed processing subject 6). In that instance, I tried using an older version of dcm2nii to convert the structural scans. While that solved the problem for subject 7, I now have this error message happening for subject 14 (again occurring while the program seems to be processing subject 13). 

Is this an image dimension issue? Any advice on how to remedy this issue?

Many thanks,
Jeremy