help > RE: How to write design matrix and contrast for continuous variable analysis (not comparison between groups)
Sep 1, 2021  12:09 AM | Andrew Zalesky
RE: How to write design matrix and contrast for continuous variable analysis (not comparison between groups)
Hi Ben, 

yes - the baseline intuition is correct. 

In the case of covariates, the relevant contrast is [0 1 0 0] or [0 -1 0 0] to test for an association with the behavioral data, and the test is still t-test. 

Using [0 1 1 1] would not be correct here. This contrast does not have a straightforward interpretation and would not be used typically. 

I hope that helps!
Andrew



Originally posted by Ben Sipes:
Hi all,

@Andrew, thank you for contribution to NBS and answering questions on this forum!! 

I have some follow-up questions to this thread to help me better understand the design matrix and contrast construction for continuous variables.

Let's say I have connectome data from N subjects as well as behavioral data from each subject as a continuous variable, then I want to ask whether there is some connected subgraph with edge strengths that linearly increase with the behavioral measure across subjects.

As I understand it, I should create an Nx2 design matrix, where the first column is a constant [ones(N,1)], and the second column is the demeaned continuous behavioral measure. Then the contrast vector would be [0 1] to find a linearly increasing connected subgraph (via NBS), and the statistical test would be "t-test." Conversely, if the question asked about a linearly decreasing subgraph, then the contrast vector would instead be [0 -1]. Is this baseline intuition correct?

Next, I would like to ask the same question, but control for two covariates, age and sex. I believe I should then have an Nx4 design matrix, with a constant (first column), demeaned behavioral measure (second column), and demeaned age and demeaned sex (third and fourth columns, respectively). Then would the associated contrast vector be [0 1 0 0]? Or would it instead be [0 1 1 1]? Are there valid but different interpretations for both of these contrasts? Is the appropriate statistical test still "t-test?"

Thank you so much for your help with this question!

--Ben

Threaded View

TitleAuthorDate
Qiushi Wang Jul 20, 2021
Ben Sipes Aug 31, 2021
RE: How to write design matrix and contrast for continuous variable analysis (not comparison between groups)
Andrew Zalesky Sep 1, 2021
Ben Sipes Sep 1, 2021
Andrew Zalesky Jul 20, 2021
Qiushi Wang Jul 21, 2021