Hi Emily,

Selecting the derivatives/fmriprep folder should automatically find all subjects data (they will appear listed in the list named 'BIDS subjects' in the GUI), you can then select in the list named 'functional' which specific runs/tasks you are interested in before clicking on 'Import' to import those to your CONN project.

Hope this helps

Alfonso

Originally posted by Emily Belleau:

Hello,

I am a bit confused about how to import fmriprep processed data into conn. I have a derivatives folder. Inside the derivatives folder is an fmriprep folder, and the fmriprep folder contains all the subject folders. The subject folders contain the anat and func folders with the data, etc. Is this the correct file organization that conn expects? When I click on the the import new fmriprep project, and then go into the fmriprep folder and select, I get the following error message: "No matching sub-* files found in BIDs directory. 

Additionally, within each func folder, I have the data for task and rest data. I only want to process two resting state runs within the func folder. How might I specify that?

 

Thanks!

 

Emily