help > subject-specific explicit mask
Dec 4, 2023  06:12 PM | Besim Prenaj
subject-specific explicit mask

Dear Conn users


I use data from dHCP that has already been preprocessed. The data has been normalized, but then brought back to its native form. So I have subject-specific masks that I would like to upload to CONN. The GUI does not seem to have an option for this. I then tried the following with the CONN batch (as described in the "CONN batch manual"):


MASK_FILE = cellstr(conn_dir('sub-*_ses-*_desc-brain_mask.nii'));
batch.Setup.voxelmask = 1;
for nsub = 1:NSUBJECTS
    for nses = 1:nsessions
        batch.Setup.voxelmaskfile{nsub}{nses} = MASK_FILE{nsub};
    end
end


However, this does not seem to work. Error message: 


Error using char Cell elements must be character arrays. Error in conn_file (line 10) filename=char(filename); Error in conn_batch (line 773) CONN_x.Setup.explicitmask=conn_file(batch.Setup.voxelmaskfile); Error in VV_Analysis (line 111) conn_batch(batch); % runs Preprocessing and Setup steps only


Can anyone help?


Thank You, Besim

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TitleAuthorDate
subject-specific explicit mask
Besim Prenaj Dec 4, 2023
Alfonso Nieto-Castanon Jan 25, 2024