help > CONN Toolbox -- file header issue at preprocessing stage
Jan 10, 2025  05:01 PM | Laura Grasso
CONN Toolbox -- file header issue at preprocessing stage

Hi all!


I'm just learning CONN and I'm having some issues with the preprocessing stage. I'm able to upload niftis of functional and structural data, but ~5 seconds into preprocessing I receive an error saying it cannot read the functional files. I'm running the "preprocessing pipeline for surface-based analysis when FieldMaps are available" in an interleaved bottom-up slice order on v22.a of CONN. The error is as follows:


ERROR DESCRIPTION:
 
Error using read_hdr
Error reading header file "/home/lab/Desktop/Demo/demo/001/001_D1/s1001/1001_rsfMRI_1_rsfMRI_1_1001'c.nii".


Error in nifti (line 26)
 vol = read_hdr(fname);


Error in conn_expandframe (line 23)
 ni = nifti(filename);


Error in conn_setup_preproc (line 3334)
 if numel(fmap)==1,fmap=cellstr(conn_expandframe(fmap{1})); end


Error in conn (line 1386)
 ok=conn_setup_preproc('',varargin{2:end});


Error in conn_menumanager (line 124)
 feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end}); 
CONN22.a
SPM12 + DAiSS DEM FieldMap MEEGtools
Matlab v.2023b
project: CONN22.a
storage: 1410.9Gb available
 
spm @ /home/lab/bin/spm12
conn @ /home/lab/bin/conn


 


Any insight would be much appreciated. Thank you!

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TitleAuthorDate
CONN Toolbox -- file header issue at preprocessing stage
Laura Grasso Jan 10, 2025
Alfonso Nieto-Castanon Jan 10, 2025
Laura Grasso Jan 10, 2025