Hi all!
I'm just learning CONN and I'm having some issues with the preprocessing stage. I'm able to upload niftis of functional and structural data, but ~5 seconds into preprocessing I receive an error saying it cannot read the functional files. I'm running the "preprocessing pipeline for surface-based analysis when FieldMaps are available" in an interleaved bottom-up slice order on v22.a of CONN. The error is as follows:
ERROR DESCRIPTION:
Error using read_hdr
Error reading header file
"/home/lab/Desktop/Demo/demo/001/001_D1/s1001/1001_rsfMRI_1_rsfMRI_1_1001'c.nii".
Error in nifti (line 26)
vol = read_hdr(fname);
Error in conn_expandframe (line 23)
ni = nifti(filename);
Error in conn_setup_preproc (line 3334)
if numel(fmap)==1,fmap=cellstr(conn_expandframe(fmap{1}));
end
Error in conn (line 1386)
ok=conn_setup_preproc('',varargin{2:end});
Error in conn_menumanager (line 124)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN22.a
SPM12 + DAiSS DEM FieldMap MEEGtools
Matlab v.2023b
project: CONN22.a
storage: 1410.9Gb available
spm @ /home/lab/bin/spm12
conn @ /home/lab/bin/conn
Any insight would be much appreciated. Thank you!
Threaded View
Title | Author | Date |
---|---|---|
Laura Grasso | Jan 10, 2025 | |
Alfonso Nieto-Castanon | Jan 10, 2025 | |
Laura Grasso | Jan 10, 2025 | |