Dear CONN community,
I am currently trying to use the automatic import function in:
Project → New (import) → From fMRIPrep dataset
However, the importer does not
create any subjects.
When I select my fMRIPrep root folder, CONN shows something
like:
“1 folder selected, XXXX matching files”
but after clicking OK, nothing happens and no data are imported. No error message appears.
Folder structure
My fMRIPrep output is located
in:
...\derivatives\
fmriprep\
dataset_description.json
sub-01\
anat\
func\
figures\
log\
sub-02\
anat\
func\
figures\
log\
...
sub-15\
The folder name is exactly
fmriprep, and
dataset_description.json is directly inside this
folder (not inside subject folders).
Filename structure
Originally, subjects were
named like sub-VP105, so I renamed them to numeric BIDS-style
names:
sub-01_task-RS1_space-MNIPediatricAsym_cohort-6_desc-preproc_bold.nii.gz
sub-01_task-RS2_space-MNIPediatricAsym_cohort-6_desc-preproc_bold.nii.gz
I am using the NIH Pediatric MNI template (MNIPediatricAsym) from fMRIPrep.
Manual loading of functional
and structural files into CONN works without issues.
Only the automatic
fMRIPrep importer does not detect any subjects.
I would like to use the automatic importer for a larger dataset (≈90 participants), so understanding why my current dataset is not detected would be very helpful.
Thank you very
much!
Ricarda
