Dear Beatrice

The data does not appear to be fully or correctly preprocessed (e.g. the functional and anatomical data does not appear to be coregistered or in MNI space). If you have not done so yet, go to the Setup tab and click on 'run preprocessing' and select and run the default preprocessing pipeline in there. That should put your data in MNI-space and also create a number of 1st-level covariates (such as realignment and scrubbing variables) that will allow you to properly denoise your data.

Hope this helps

Alfonso

Originally posted by Beatrice Bravi:

Dear all, 

I'm writing to ask a question about my data. I have two acquisition in resting state fMRI for each subject: one pre-treatment and one post-treatment.

I have reoriented the T1 and rs-fMRI images for each subject's condition. Then in CONN setup I set the number of subjects and the number of session (2) together with the TR. After that, I selected the T1s and rs-fMRIs and setup the two conditions (pre and post).

After running the first preprocessing step I obtained these images that I attach here.

What's wrong with all the images?

Any help would be very appreciated.

Best,

 

Beatrice